Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0049 Marchantia polymorpha HOM05D003234 ORTHO05D003635 4.6e-46 187.6 98 100.0
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 6.8e-13 77.4 102 47.1
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.2e-12 76.6 103 46.6
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 3.4e-12 75.1 102 48.0
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 5.7e-12 74.3 102 43.1
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 7.5e-12 73.9 103 41.7
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.3e-11 73.2 102 42.2
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 1.7e-11 72.8 102 42.2
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.7e-11 72.8 102 43.1
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 1.7e-11 72.8 102 44.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 1.7e-11 72.8 102 41.2
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 1.7e-11 72.8 102 42.2
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 2.2e-11 72.4 102 42.2
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 2.8e-11 72.0 102 43.1
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 2.8e-11 72.0 102 43.1
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 2.8e-11 72.0 102 44.1
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 2.8e-11 72.0 102 44.1
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.7e-11 71.6 102 43.1
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.7e-11 71.6 102 43.1
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 3.7e-11 71.6 102 42.2
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 3.7e-11 71.6 102 43.1
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 4.8e-11 71.2 101 41.6
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 4.8e-11 71.2 102 43.1
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 4.8e-11 71.2 102 42.2
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 4.8e-11 71.2 102 43.1
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 4.8e-11 71.2 102 41.2
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 4.8e-11 71.2 102 43.1
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 4.8e-11 71.2 104 40.4
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 6.3e-11 70.9 102 43.1
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 6.3e-11 70.9 102 42.2
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 6.3e-11 70.9 102 42.2
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 8.3e-11 70.5 102 46.1
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 8.3e-11 70.5 102 41.2
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 8.3e-11 70.5 102 42.2
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 1.1e-10 70.1 101 41.6
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.1e-10 70.1 102 41.2
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 1.1e-10 70.1 102 42.2
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.1e-10 70.1 102 41.2
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 1.1e-10 70.1 102 41.2
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.4e-10 69.7 102 42.2
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.4e-10 69.7 102 42.2
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.4e-10 69.7 102 42.2
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.4e-10 69.7 102 39.2
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.4e-10 69.7 102 46.1
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 1.4e-10 69.7 102 42.2
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.8e-10 69.3 102 43.1
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 1.8e-10 69.3 102 41.2
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.8e-10 69.3 102 40.2
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 1.8e-10 69.3 104 41.3
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.8e-10 69.3 102 40.2
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 1.8e-10 69.3 102 44.1
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.8e-10 69.3 102 42.2
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 2.4e-10 68.9 102 40.2
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 2.4e-10 68.9 102 40.2
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 2.4e-10 68.9 102 40.2
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 3.1e-10 68.6 102 40.2
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 3.1e-10 68.6 103 38.8
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 3.1e-10 68.6 103 43.7
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 3.1e-10 68.6 102 42.2
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 3.1e-10 68.6 102 41.2
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 4.1e-10 68.2 104 37.5
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 4.1e-10 68.2 102 40.2
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 4.1e-10 68.2 102 42.2
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 4.1e-10 68.2 102 42.2
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 4.1e-10 68.2 109 41.3
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 4.1e-10 68.2 102 39.2
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 4.1e-10 68.2 102 43.1
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 5.4e-10 67.8 101 44.6
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 5.4e-10 67.8 102 41.2
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 5.4e-10 67.8 102 42.2
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 7.0e-10 67.4 104 42.3
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 7.0e-10 67.4 103 39.8
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 39.2
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 39.2
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 39.2
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 39.2
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 39.2
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 39.2
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 41.2
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 41.2
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 9.1e-10 67.0 102 40.2
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.2e-09 66.6 102 42.2
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.2e-09 66.6 102 41.2
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.2e-09 66.6 102 41.2
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 1.2e-09 66.6 102 40.2
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 1.2e-09 66.6 102 40.2
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.2e-09 66.6 102 41.2
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.6e-09 66.2 102 40.2
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.6e-09 66.2 102 41.2
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 2.0e-09 65.9 102 40.2
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 2.0e-09 65.9 102 40.2
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 2.7e-09 65.5 102 38.2
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 2.7e-09 65.5 102 40.2
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.7e-09 65.5 103 38.8
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 2.7e-09 65.5 101 41.6
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 2.7e-09 65.5 102 40.2
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 2.7e-09 65.5 102 40.2
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 3.5e-09 65.1 102 39.2
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 3.5e-09 65.1 126 35.7
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 3.5e-09 65.1 102 40.2
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 3.5e-09 65.1 102 39.2
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 5.9e-09 64.3 102 40.2
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 5.9e-09 64.3 104 40.4
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 7.7e-09 63.9 104 37.5
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 1.0e-08 63.5 102 34.3
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 1.0e-08 63.5 102 39.2
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 1.0e-08 63.5 102 42.2
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 1.3e-08 63.2 102 40.2
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 1.3e-08 63.2 102 40.2
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.7e-08 62.8 101 40.6
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.7e-08 62.8 102 39.2
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.7e-08 62.8 86 45.3
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.2e-08 62.4 102 38.2
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 2.9e-08 62.0 102 38.2
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.8e-08 61.6 102 38.2
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 3.8e-08 61.6 101 40.6
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.8e-08 61.6 102 39.2
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 6.5e-08 60.8 98 39.8
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 8.5e-08 60.5 103 35.9
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 8.5e-08 60.5 103 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3603 Anthoceros agrestis HOM05D003234 ORTHO05D003635 1.1e-07 60.1 102 39.2
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 1.5e-07 59.7 105 34.3
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 1.5e-07 59.7 104 33.7
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 1.5e-07 59.7 89 41.6
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 2.5e-07 58.9 101 34.7
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 2.5e-07 58.9 109 36.7
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 3.2e-07 58.5 121 34.7
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 4.2e-07 58.2 103 39.8
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 4.2e-07 58.2 103 39.8
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 5.5e-07 57.8 103 38.8
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 7.2e-07 57.4 101 37.6
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 1.6e-06 56.2 100 41.0
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.6e-06 56.2 100 37.0
BolC5t30606H Brassica oleracea HOM05D003234 ORTHO05D003635 6.1e-06 54.3 74 43.2
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 8.0e-06 53.9 99 36.4


User provided reference genes

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