Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 2.2e-166 589.0 319 100.0
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 6.7e-70 268.5 212 63.7
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.3e-68 264.2 330 48.8
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 7.0e-67 258.5 317 47.0
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 9.1e-67 258.1 295 50.5
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.6e-66 257.3 313 50.8
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 2.6e-66 256.5 293 51.9
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.6e-66 256.5 319 50.8
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.9e-66 255.4 188 66.0
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.7e-65 253.8 294 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.5e-64 250.8 202 65.3
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 2.5e-64 250.0 301 49.2
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.6e-63 247.3 296 50.3
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.6e-63 247.3 292 49.3
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.6e-63 247.3 292 49.3
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.1e-63 246.9 298 48.3
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 2.7e-63 246.5 316 45.3
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 2.7e-63 246.5 293 49.8
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 3.6e-63 246.1 291 48.8
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 6.1e-63 245.4 306 45.4
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.1e-63 245.4 298 48.0
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.0e-63 245.0 298 47.7
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.0e-63 245.0 298 47.7
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.0e-62 244.6 292 49.3
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.8e-62 243.8 291 49.5
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 3.0e-62 243.0 291 48.8
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 4.0e-62 242.7 320 50.9
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.0e-62 242.7 298 47.3
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 5.2e-62 242.3 320 50.9
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 5.2e-62 242.3 320 50.9
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 6.7e-62 241.9 291 46.7
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 6.7e-62 241.9 293 49.5
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.7e-62 241.9 325 43.1
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 8.8e-62 241.5 303 47.9
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 8.8e-62 241.5 322 50.6
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 8.8e-62 241.5 320 50.6
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 1.1e-61 241.1 319 47.3
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 2.0e-61 240.4 318 43.1
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 4.4e-61 239.2 301 46.8
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 4.4e-61 239.2 316 47.5
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 5.7e-61 238.8 299 46.5
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 7.5e-61 238.4 291 48.5
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 7.5e-61 238.4 318 43.4
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 9.7e-61 238.0 320 49.1
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 9.7e-61 238.0 290 48.3
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 9.7e-61 238.0 324 42.9
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.3e-60 237.7 299 44.1
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.7e-60 237.3 319 49.5
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 6.3e-60 235.3 320 45.9
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 6.3e-60 235.3 291 49.1
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 6.3e-60 235.3 318 43.4
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 8.2e-60 235.0 279 47.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 8.2e-60 235.0 194 55.7
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 8.2e-60 235.0 294 49.3
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.1e-59 234.6 319 46.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 2.4e-59 233.4 320 46.2
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 3.1e-59 233.0 323 48.6
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 3.1e-59 233.0 323 48.6
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 4.1e-59 232.6 316 46.2
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 5.3e-59 232.3 292 48.3
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.3e-59 232.3 318 43.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 5.3e-59 232.3 217 53.9
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 7.0e-59 231.9 293 47.1
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 9.1e-59 231.5 215 52.6
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.6e-58 230.7 293 47.4
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 2.0e-58 230.3 303 45.5
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 2.7e-58 229.9 322 43.5
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 4.5e-58 229.2 331 44.7
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.0e-57 228.0 320 45.6
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.7e-57 227.3 283 46.3
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 2.2e-57 226.9 323 45.8
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.8e-57 226.1 185 58.9
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 6.5e-57 225.3 294 46.6
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.5e-56 224.2 303 45.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.9e-56 223.8 313 46.0
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.5e-56 223.4 313 45.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 2.5e-56 223.4 319 44.5
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 4.2e-56 222.6 319 46.7
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 7.2e-56 221.9 322 44.7
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.2e-55 221.1 310 45.2
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.2e-55 221.1 310 45.2
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.6e-55 220.7 313 43.1
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.6e-55 220.7 326 43.6
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 3.6e-55 219.5 292 46.9
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 4.7e-55 219.2 319 42.0
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 6.1e-55 218.8 292 44.9
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 6.1e-55 218.8 311 43.1
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 6.1e-55 218.8 297 45.1
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 6.8e-54 215.3 278 46.4
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.5e-53 214.2 187 57.2
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 1.5e-53 214.2 313 44.1
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.0e-53 213.8 217 50.2
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 2.0e-53 213.8 291 46.4
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 2.0e-53 213.8 297 45.5
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 9.8e-53 211.5 322 46.9
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.3e-52 211.1 291 46.0
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.7e-52 210.7 188 54.3
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 2.2e-52 210.3 188 54.8
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 4.8e-52 209.1 313 45.4
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 4.8e-52 209.1 203 52.7
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 6.3e-52 208.8 278 45.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 8.3e-52 208.4 292 46.2
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.8e-51 207.2 299 43.5
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.8e-51 207.2 199 51.3
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.4e-51 206.8 294 44.6
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 3.1e-51 206.5 197 54.3
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.1e-51 206.5 200 51.0
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 3.1e-51 206.5 192 52.1
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 3.1e-51 206.5 318 46.2
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 4.1e-51 206.1 319 45.8
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 5.4e-51 205.7 192 54.7
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 5.4e-51 205.7 310 43.5
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.0e-49 201.4 291 43.3
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 5.0e-49 199.1 285 43.2
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 6.5e-49 198.7 303 40.9
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.1e-48 198.0 224 46.9
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.5e-48 197.6 291 44.3
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 4.2e-48 196.1 291 43.6
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 5.5e-48 195.7 163 56.4
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-47 193.7 292 44.2
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.5e-45 187.6 195 49.7
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 7.5e-45 185.3 316 40.2
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 7.0e-43 178.7 372 36.3
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.2e-42 177.9 242 47.9
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 1.1e-40 171.4 206 44.2
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 9.8e-37 158.3 162 50.0
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.5e-32 144.4 298 34.9
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 1.4e-30 137.9 199 39.7
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 7.5e-29 132.1 291 31.3
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 9.2e-27 125.2 102 55.9
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.2e-26 124.8 216 38.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 2.3e-22 110.5 143 44.8
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.1e-15 87.4 84 53.6
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 8.9e-14 82.0 68 51.5
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 2.6e-13 80.5 214 29.9
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.2e-12 77.4 52 59.6
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 8.4e-12 75.5 63 50.8
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 3.2e-11 73.6 61 50.8
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 4.6e-10 69.7 205 27.3
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.4e-06 58.2 49 51.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.1e-06 57.0 46 54.3
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 4.0e-06 56.6 47 59.6
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.2e-06 56.2 51 52.9
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 8.9e-06 55.5 146 33.6
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 8.9e-06 55.5 146 33.6


User provided reference genes

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