Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 1.8e-241 839.0 467 100.0
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 7.5e-86 322.0 396 51.8
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 1.0e-66 258.5 392 42.6
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 9.5e-65 251.9 391 40.2
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 2.8e-64 250.4 389 38.6
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 4.7e-64 249.6 423 35.2
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 1.1e-63 248.4 397 39.0
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 1.8e-63 247.7 379 40.9
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 2.3e-63 247.3 320 43.4
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 2.3e-63 247.3 328 44.2
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 3.1e-63 246.9 411 38.7
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 6.8e-63 245.7 392 39.8
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 1.2e-62 245.0 391 38.9
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 2.6e-62 243.8 342 41.2
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 3.4e-62 243.4 397 39.3
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 3.4e-62 243.4 355 39.7
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 3.4e-62 243.4 421 36.8
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 5.8e-62 242.7 318 43.7
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 5.8e-62 242.7 331 41.7
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 1.3e-61 241.5 391 38.6
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 2.2e-61 240.7 356 41.0
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 2.9e-61 240.4 396 39.4
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 3.7e-61 240.0 393 39.4
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 4.9e-61 239.6 318 42.1
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 4.9e-61 239.6 318 42.1
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 4.9e-61 239.6 319 42.9
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 4.9e-61 239.6 393 39.4
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 4.9e-61 239.6 359 40.9
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 6.4e-61 239.2 370 38.6
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 6.4e-61 239.2 318 41.2
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 1.1e-60 238.4 389 39.3
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 1.1e-60 238.4 381 39.1
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 1.9e-60 237.7 318 42.1
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.2e-60 236.9 391 37.1
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 4.1e-60 236.5 393 37.9
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 5.4e-60 236.1 394 38.8
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 5.4e-60 236.1 318 41.5
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 5.4e-60 236.1 392 38.0
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 7.1e-60 235.7 357 39.2
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 1.6e-59 234.6 375 37.1
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 1.6e-59 234.6 370 38.4
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 2.1e-59 234.2 391 36.8
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 2.1e-59 234.2 319 40.8
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 2.7e-59 233.8 400 37.8
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 6.0e-59 232.6 390 37.9
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 6.0e-59 232.6 396 38.6
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 6.0e-59 232.6 391 37.1
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 7.8e-59 232.3 317 42.0
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.3e-58 231.5 389 38.8
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 1.3e-58 231.5 370 38.4
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 1.7e-58 231.1 402 38.1
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 2.3e-58 230.7 323 41.5
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 3.9e-58 229.9 371 39.1
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 3.9e-58 229.9 351 39.3
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.5e-57 228.0 352 38.4
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 1.5e-57 228.0 350 38.9
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 2.5e-57 227.3 390 36.4
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 2.5e-57 227.3 373 38.6
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 2.5e-57 227.3 344 39.8
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 2.5e-57 227.3 390 36.4
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 2.5e-57 227.3 352 40.9
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 3.3e-57 226.9 320 42.8
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 5.6e-57 226.1 419 35.8
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 9.6e-57 225.3 319 40.1
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 1.2e-56 224.9 354 39.3
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 1.4e-55 221.5 382 38.0
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 7.6e-54 215.7 377 37.4
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 9.9e-54 215.3 415 35.2
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 1.3e-53 214.9 334 37.4
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 2.2e-53 214.2 330 39.7
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 1.4e-52 211.5 347 39.8
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 7.8e-51 205.7 376 36.2
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 1.7e-50 204.5 387 37.2
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 2.3e-50 204.1 274 42.7
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 3.3e-49 200.3 320 39.7
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 1.6e-48 198.0 363 42.4
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 5.3e-47 193.0 396 38.6
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 5.3e-47 193.0 390 39.5
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 6.9e-47 192.6 349 36.7
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 1.3e-42 178.3 321 35.2
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.3e-42 178.3 250 41.2
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 2.5e-41 174.1 229 41.9
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 8.1e-40 169.1 317 34.1
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 1.4e-39 168.3 206 42.7
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.1e-36 158.7 306 34.3
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 3.5e-35 153.7 352 32.1
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 1.0e-34 152.1 268 36.6
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 6.2e-32 142.9 513 26.7
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 1.4e-31 141.7 146 50.0
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 1.8e-31 141.4 285 35.4
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 9.3e-28 129.0 242 35.5
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 2.1e-27 127.9 115 53.0
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 1.3e-26 125.2 121 52.9
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 5.3e-23 113.2 189 37.6
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 1.7e-21 108.2 116 46.6
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 1.7e-21 108.2 103 53.4
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 2.1e-19 101.3 189 33.9
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 3.5e-19 100.5 343 27.4
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 3.9e-18 97.1 211 34.1
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 2.4e-15 87.8 210 34.8
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 5.0e-13 80.1 399 25.3
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 4.3e-09 67.0 160 32.5
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 5.7e-09 66.6 87 42.5


User provided reference genes

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