Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.9e-52 208.8 98 100.0
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 2.2e-32 142.1 98 63.3
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 1.3e-24 116.3 96 54.2
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 1.3e-24 116.3 96 54.2
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 1.7e-24 115.9 95 53.7
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 2.9e-24 115.2 98 54.1
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 2.9e-24 115.2 98 54.1
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 2.9e-24 115.2 95 54.7
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 2.9e-24 115.2 95 53.7
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 2.9e-24 115.2 95 54.7
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 3.8e-24 114.8 98 54.1
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 3.8e-24 114.8 94 54.3
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 5.0e-24 114.4 95 54.7
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 6.5e-24 114.0 95 52.6
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 6.5e-24 114.0 95 52.6
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 1.9e-23 112.5 96 52.1
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 1.9e-23 112.5 95 52.6
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 1.9e-23 112.5 95 52.6
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 1.9e-23 112.5 95 52.6
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 2.5e-23 112.1 94 53.2
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 2.5e-23 112.1 95 51.6
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 2.5e-23 112.1 94 53.2
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 2.5e-23 112.1 93 54.8
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 2.5e-23 112.1 95 52.6
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 3.2e-23 111.7 95 52.6
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 3.2e-23 111.7 96 53.1
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 3.2e-23 111.7 93 53.8
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 3.2e-23 111.7 95 52.6
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 4.2e-23 111.3 93 53.8
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 4.2e-23 111.3 93 53.8
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 4.2e-23 111.3 94 54.3
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 4.2e-23 111.3 94 54.3
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 4.2e-23 111.3 94 54.3
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 4.2e-23 111.3 94 54.3
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 4.2e-23 111.3 94 54.3
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 4.2e-23 111.3 95 51.6
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 4.2e-23 111.3 94 52.1
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 4.2e-23 111.3 94 54.3
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 4.2e-23 111.3 96 52.1
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 5.5e-23 110.9 95 52.6
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 5.5e-23 110.9 95 52.6
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 5.5e-23 110.9 95 52.6
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 5.5e-23 110.9 95 52.6
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 5.5e-23 110.9 97 51.5
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 5.5e-23 110.9 94 52.1
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 5.5e-23 110.9 94 53.2
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 5.5e-23 110.9 95 51.6
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 7.2e-23 110.5 93 52.7
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 7.2e-23 110.5 95 51.6
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 7.2e-23 110.5 94 54.3
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 7.2e-23 110.5 96 53.1
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 9.4e-23 110.2 94 53.2
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 9.4e-23 110.2 95 51.6
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 9.4e-23 110.2 95 51.6
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 9.4e-23 110.2 95 50.5
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 1.2e-22 109.8 97 51.5
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 1.2e-22 109.8 94 52.1
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 1.2e-22 109.8 94 53.2
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 1.2e-22 109.8 94 52.1
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 1.2e-22 109.8 95 52.6
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 1.6e-22 109.4 95 50.5
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 1.6e-22 109.4 95 50.5
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 1.6e-22 109.4 96 51.0
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 2.7e-22 108.6 94 53.2
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 2.7e-22 108.6 95 51.6
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 3.6e-22 108.2 93 51.6
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 3.6e-22 108.2 94 51.1
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 3.6e-22 108.2 95 51.6
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 4.7e-22 107.8 97 50.5
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 4.7e-22 107.8 95 49.5
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 4.7e-22 107.8 95 50.5
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 8.0e-22 107.1 95 50.5
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 8.0e-22 107.1 96 50.0
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 8.0e-22 107.1 94 48.9
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 1.0e-21 106.7 95 49.5
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 1.0e-21 106.7 93 50.5
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 1.4e-21 106.3 93 50.5
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 1.4e-21 106.3 95 49.5
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 1.8e-21 105.9 94 47.9
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 1.8e-21 105.9 95 52.6
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 2.3e-21 105.5 95 49.5
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 2.3e-21 105.5 95 49.5
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 3.0e-21 105.1 95 48.4
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 3.0e-21 105.1 94 48.9
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 4.0e-21 104.8 94 50.0
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 8.8e-21 103.6 94 48.9
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 8.8e-21 103.6 94 48.9
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 8.8e-21 103.6 94 48.9
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 8.8e-21 103.6 94 48.9
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 8.8e-21 103.6 94 48.9
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 8.8e-21 103.6 98 50.0
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 1.1e-20 103.2 95 50.5
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 1.5e-20 102.8 95 50.5
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 2.0e-20 102.4 93 48.4
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 2.6e-20 102.1 97 49.5
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 3.3e-20 101.7 95 48.4
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 5.7e-20 100.9 96 49.0
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 5.7e-20 100.9 95 47.4
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 7.4e-20 100.5 94 51.1
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 1.3e-19 99.8 94 47.9
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.3e-19 99.8 94 47.9
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 2.2e-19 99.0 94 50.0
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 2.2e-19 99.0 94 50.0
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 2.8e-19 98.6 118 43.2
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 2.8e-19 98.6 118 43.2
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 2.8e-19 98.6 118 43.2
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 4.8e-19 97.8 89 50.6
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 6.3e-19 97.4 110 42.7
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 2.4e-18 95.5 94 45.7
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 3.1e-18 95.1 112 42.0
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 4.1e-18 94.7 95 48.4
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 7.0e-18 94.0 128 39.1
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 2.6e-17 92.0 94 48.9
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 2.2e-16 89.0 84 46.4
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 1.5e-15 86.3 137 35.0
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 1.5e-15 86.3 137 35.0
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 8.8e-13 77.0 66 50.0
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 3.5e-09 65.1 69 46.4
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 2.2e-08 62.4 45 57.8
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 5.5e-07 57.8 50 50.0
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 9.4e-07 57.0 50 54.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 9.4e-07 57.0 50 54.0
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 6.1e-06 54.3 59 45.8


User provided reference genes

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