Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 0.0e+00 2379.7 1199 100.0
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 0.0e+00 1654.8 1214 70.6
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 0.0e+00 1119.4 1198 49.8
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 2.1e-289 999.6 1217 45.4
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 9.4e-258 894.4 1196 43.4
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 2.8e-254 882.9 1199 41.5
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 2.6e-252 876.3 1198 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 8.5e-251 871.3 770 58.3
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 1.9e-250 870.2 1198 42.7
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 5.2e-248 862.1 1196 41.6
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 6.8e-248 861.7 1202 41.9
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 3.4e-247 859.4 1218 42.1
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 5.7e-247 858.6 1200 41.1
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 2.8e-246 856.3 1195 41.3
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 1.1e-245 854.4 1198 41.3
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 5.3e-245 852.0 1193 41.1
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 9.1e-245 851.3 1196 41.1
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.2e-244 850.9 1198 41.8
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 1.3e-243 847.4 1192 41.8
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 6.5e-243 845.1 1210 41.1
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 8.5e-243 844.7 1194 40.9
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 1.5e-242 844.0 1171 42.4
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 1.9e-242 843.6 1218 40.3
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 7.2e-242 841.6 1202 40.9
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 3.6e-241 839.3 1191 41.2
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 3.6e-241 839.3 1190 41.2
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 3.6e-241 839.3 1192 41.2
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 3.6e-241 839.3 1200 40.5
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 8.0e-241 838.2 1192 40.8
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 1.4e-240 837.4 1195 41.7
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 2.3e-240 836.6 1192 39.9
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 2.0e-239 833.6 1198 40.9
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 2.6e-239 833.2 1199 40.1
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 1.3e-238 830.9 1210 39.8
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 1.7e-238 830.5 1198 40.7
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 1.7e-238 830.5 1203 39.6
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 2.8e-238 829.7 1213 40.9
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 6.3e-238 828.6 1201 41.2
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 1.4e-237 827.4 1200 40.0
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 1.8e-237 827.0 1200 40.1
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 2.4e-237 826.6 1201 40.2
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 5.4e-237 825.5 1198 40.6
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 9.1e-237 824.7 1205 40.4
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 2.0e-236 823.5 1191 39.8
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 1.0e-235 821.2 1196 40.2
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 1.3e-235 820.8 1197 39.8
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 1.3e-235 820.8 1215 39.4
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 2.3e-235 820.1 1194 40.7
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 8.6e-235 818.1 1192 39.8
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 9.5e-234 814.7 1207 39.9
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.6e-233 813.9 1207 39.7
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.6e-233 813.9 1195 40.0
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 1.8e-232 810.4 1195 40.5
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 1.8e-232 810.4 1209 39.5
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 1.2e-231 807.7 1218 40.9
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 2.0e-231 807.0 1197 40.2
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 2.6e-231 806.6 1197 39.9
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 3.4e-231 806.2 1216 41.2
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 3.4e-231 806.2 1200 39.4
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 4.4e-231 805.8 1195 39.3
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 7.5e-231 805.1 1195 39.3
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 3.7e-230 802.7 1192 38.9
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 1.4e-229 800.8 1194 39.9
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 1.8e-229 800.4 1191 39.4
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 2.4e-229 800.0 1213 40.1
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 4.1e-229 799.3 1214 40.8
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 7.0e-229 798.5 1190 40.1
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 9.2e-229 798.1 1215 39.1
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 1.6e-228 797.3 1240 37.9
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 2.7e-228 796.6 1198 40.8
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 4.5e-228 795.8 1216 40.6
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 5.9e-228 795.4 1216 40.3
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 5.9e-228 795.4 1203 39.6
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 2.9e-227 793.1 1215 40.5
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 1.5e-226 790.8 1212 40.4
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 1.5e-226 790.8 1212 40.3
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 1.9e-226 790.4 1193 38.6
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 7.3e-226 788.5 1196 39.1
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 3.1e-224 783.1 1196 38.5
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 5.2e-224 782.3 1198 39.6
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 8.9e-224 781.6 1202 38.9
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 3.7e-222 776.2 1214 38.1
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 7.0e-221 771.9 1346 36.0
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 3.5e-220 769.6 1059 41.6
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 1.5e-218 764.2 1126 41.2
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 8.1e-217 758.4 1321 36.6
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 3.7e-214 749.6 1196 38.5
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 5.4e-213 745.7 1230 36.7
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 2.1e-209 733.8 1072 40.8
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 2.8e-209 733.4 1195 38.2
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 6.2e-209 732.3 1213 38.3
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 5.2e-200 702.6 1195 36.6
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 3.4e-199 699.9 1204 36.6
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 4.4e-199 699.5 1080 38.1
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 4.2e-197 693.0 1190 36.4
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 2.4e-189 667.2 1056 38.4
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 6.2e-185 652.5 1057 38.8
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 4.0e-184 649.8 1056 38.4
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 8.2e-161 572.4 703 44.4
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 1.4e-160 571.6 749 44.3
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 1.2e-156 558.5 1061 36.5
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 8.2e-153 545.8 707 43.0
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 7.7e-143 512.7 734 40.1
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.9e-125 454.9 518 47.1
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 1.1e-120 439.1 769 36.7
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 8.3e-113 412.9 692 36.6
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 2.1e-108 398.3 732 35.0
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 3.2e-88 331.3 790 32.0
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 8.6e-86 323.2 867 30.8
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 1.9e-85 322.0 438 44.1
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 6.9e-75 287.0 458 36.9
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 1.1e-72 279.6 440 37.3
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 3.2e-64 251.5 456 36.2
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 6.7e-54 217.2 1271 23.0
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 6.7e-54 217.2 440 31.8
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 3.9e-46 191.4 306 35.9
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 1.8e-35 156.0 1222 23.3
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 7.7e-34 150.6 229 37.1
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 2.5e-32 145.6 158 48.7
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.1e-29 136.7 366 30.1
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 2.0e-29 136.0 117 55.6
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 5.7e-29 134.4 118 54.2
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 4.5e-26 124.8 343 30.9
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 5.0e-25 121.3 167 41.9
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 1.5e-21 109.8 126 46.0


User provided reference genes

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