Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 1.6e-175 619.4 325 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 1.1e-72 277.7 194 71.6
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 8.7e-65 251.5 183 67.8
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 8.7e-65 251.5 183 67.8
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 3.3e-64 249.6 209 57.9
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 1.3e-63 247.7 250 56.0
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 6.2e-63 245.4 186 63.4
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 8.1e-63 245.0 203 57.6
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 1.1e-62 244.6 171 66.1
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 1.8e-62 243.8 177 64.4
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 2.4e-62 243.4 177 64.4
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 2.4e-62 243.4 177 65.0
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 3.1e-62 243.0 177 64.4
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 4.0e-62 242.7 220 55.0
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 4.0e-62 242.7 171 66.1
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 4.0e-62 242.7 177 63.8
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 4.0e-62 242.7 196 59.2
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 5.3e-62 242.3 178 63.5
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 5.3e-62 242.3 177 64.4
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 6.9e-62 241.9 200 60.5
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 1.2e-61 241.1 198 58.1
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.2e-61 241.1 170 65.9
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 1.5e-61 240.7 182 62.6
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 1.5e-61 240.7 177 63.3
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 2.0e-61 240.4 170 65.9
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 2.6e-61 240.0 171 67.3
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 3.4e-61 239.6 177 63.8
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 3.4e-61 239.6 176 65.3
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 4.5e-61 239.2 171 63.7
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 5.8e-61 238.8 186 61.8
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 5.8e-61 238.8 176 64.8
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 7.6e-61 238.4 211 55.5
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 7.6e-61 238.4 198 58.6
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 9.9e-61 238.0 171 63.7
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 9.9e-61 238.0 171 65.5
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 9.9e-61 238.0 174 63.2
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 9.9e-61 238.0 176 63.1
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 1.3e-60 237.7 175 62.9
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 1.3e-60 237.7 179 61.5
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 1.3e-60 237.7 177 62.7
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 1.3e-60 237.7 176 63.1
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 2.2e-60 236.9 175 64.0
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 2.9e-60 236.5 174 62.6
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 6.4e-60 235.3 208 54.3
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 8.4e-60 235.0 178 63.5
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 8.4e-60 235.0 171 63.7
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 8.4e-60 235.0 170 64.7
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 8.4e-60 235.0 186 61.3
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 1.4e-59 234.2 182 62.6
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 2.4e-59 233.4 177 61.6
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 2.4e-59 233.4 192 58.3
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 3.2e-59 233.0 184 61.4
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 5.4e-59 232.3 199 58.3
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 5.4e-59 232.3 200 56.0
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 5.4e-59 232.3 200 56.0
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 5.4e-59 232.3 198 57.1
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 5.4e-59 232.3 229 52.4
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 1.2e-58 231.1 178 60.1
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 1.2e-58 231.1 177 60.5
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 1.6e-58 230.7 182 60.4
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 1.6e-58 230.7 194 58.2
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 2.1e-58 230.3 191 57.6
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 2.1e-58 230.3 204 55.9
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 2.7e-58 229.9 177 61.6
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 4.6e-58 229.2 185 59.5
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 6.0e-58 228.8 203 55.2
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 6.0e-58 228.8 171 62.6
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 7.9e-58 228.4 203 56.2
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 1.0e-57 228.0 197 56.9
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 1.0e-57 228.0 197 56.3
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 1.0e-57 228.0 194 56.7
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 1.3e-57 227.6 192 57.3
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 2.3e-57 226.9 172 62.8
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 2.3e-57 226.9 217 53.5
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 8.7e-57 224.9 159 66.0
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 8.7e-57 224.9 159 66.0
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 1.1e-56 224.6 191 57.1
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 1.5e-56 224.2 208 52.9
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 2.5e-56 223.4 182 59.3
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 5.6e-56 222.2 202 55.0
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 5.6e-56 222.2 202 55.0
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 7.4e-56 221.9 198 55.6
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 7.4e-56 221.9 198 55.6
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 7.4e-56 221.9 166 63.3
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 1.3e-55 221.1 197 55.8
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 1.6e-55 220.7 202 54.0
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 2.1e-55 220.3 201 56.2
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 2.8e-55 219.9 208 52.9
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 4.8e-55 219.2 182 58.8
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 6.2e-55 218.8 200 54.5
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 1.1e-54 218.0 171 60.8
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 1.4e-54 217.6 208 52.9
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 4.5e-53 212.6 204 53.9
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 2.4e-51 206.8 179 55.9
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 3.2e-51 206.5 194 53.6
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 7.1e-51 205.3 155 63.9
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 1.2e-50 204.5 178 55.6
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 8.7e-49 198.4 180 56.7
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 1.1e-48 198.0 209 49.8
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.9e-48 197.2 172 56.4
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 9.6e-48 194.9 170 54.1
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 9.6e-48 194.9 170 54.1
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 2.8e-47 193.4 175 54.9
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 8.1e-47 191.8 151 58.9
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 7.9e-42 175.3 139 59.0
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 8.7e-41 171.8 165 55.2
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.5e-40 171.0 132 62.9
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 5.7e-40 169.1 130 61.5
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 2.3e-33 147.1 133 54.1
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 2.8e-31 140.2 121 55.4
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 6.9e-30 135.6 125 56.0
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 3.2e-27 126.7 107 60.7
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 2.7e-26 123.6 168 41.7
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 3.0e-25 120.2 207 33.8
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 4.2e-19 99.8 100 50.0
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 5.2e-17 92.8 175 41.1
Aa31LG4G7120 Aethionema arabicum HOM05D006773 ORTHO05D008775 3.6e-10 70.1 144 29.9
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 3.0e-09 67.0 147 28.6
HPP92_004476 Vanilla planifolia HOM05D006773 ORTHO05D008775 6.7e-09 65.9 146 29.5
ATR1136G180 Amborella trichopoda HOM05D006773 ORTHO05D008775 1.2e-08 65.1 147 27.2
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 1.5e-08 64.7 147 26.5
MSTRG.22383 Avicennia marina HOM05D006773 ORTHO05D008775 2.0e-08 64.3 147 26.5
Cfa018374 Carpinus fangiana HOM05D006773 ORTHO05D008775 2.0e-08 64.3 152 28.9
QL09p028661 Quercus lobata HOM05D006773 ORTHO05D008775 2.0e-08 64.3 154 28.6
MD10G1012400 Malus domestica HOM05D006773 ORTHO05D008775 2.6e-08 63.9 147 27.2
Nn5g28592 Nelumbo nucifera HOM05D006773 ORTHO05D008775 2.6e-08 63.9 151 27.8
Duzib093G1219 Durio zibethinus HOM05D006773 ORTHO05D008775 3.3e-08 63.5 152 27.0
MD05G1012500 Malus domestica HOM05D006773 ORTHO05D008775 3.3e-08 63.5 147 27.2
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 4.4e-08 63.2 147 26.5
Haze_17696 Corylus avellana HOM05D006773 ORTHO05D005980 7.5e-08 62.4 152 28.3
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 9.7e-08 62.0 149 26.2
Thecc.08G143200 Theobroma cacao HOM05D006773 ORTHO05D008775 9.7e-08 62.0 152 27.0
Potri.002G072400 Populus trichocarpa HOM05D006773 ORTHO05D008775 1.3e-07 61.6 154 27.9
Sabra02G0057000 Salix brachista HOM05D006773 ORTHO05D008775 1.3e-07 61.6 154 27.3
Rhsim09G0002200 Rhododendron simsii HOM05D006773 ORTHO05D008775 4.8e-07 59.7 147 25.2
vmacro00729 Vaccinium macrocarpon HOM05D006773 ORTHO05D008775 4.8e-07 59.7 147 25.2
TAR625G1315 Trochodendron aralioides HOM05D006773 ORTHO05D008775 2.4e-06 57.4 152 25.7


User provided reference genes

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