Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 3.0e-66 255.0 125 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.6e-30 136.3 109 63.3
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.6e-30 136.3 78 78.2
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.6e-30 136.3 78 78.2
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.6e-30 136.3 82 75.6
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 7.8e-30 134.0 79 75.9
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.3e-29 133.3 86 75.6
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.8e-29 131.7 100 63.0
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.8e-29 131.7 90 68.9
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 3.8e-29 131.7 90 68.9
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 5.0e-29 131.3 96 64.6
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 5.0e-29 131.3 80 72.5
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.0e-29 131.3 108 58.3
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.0e-29 131.3 108 58.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 6.6e-29 131.0 90 68.9
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 6.6e-29 131.0 100 62.0
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 6.6e-29 131.0 102 61.8
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.1e-28 130.2 83 73.5
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.1e-28 130.2 78 75.6
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.9e-28 129.4 96 62.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.9e-28 129.4 89 65.2
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.9e-28 129.4 97 62.9
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.3e-28 128.6 91 65.9
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.3e-28 128.6 91 65.9
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 3.3e-28 128.6 78 73.1
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 3.3e-28 128.6 78 73.1
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.3e-28 128.3 89 67.4
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 5.6e-28 127.9 88 69.3
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 7.3e-28 127.5 106 57.5
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 9.5e-28 127.1 83 72.3
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 9.5e-28 127.1 89 65.2
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 9.5e-28 127.1 83 71.1
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-27 126.7 89 65.2
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-27 126.7 89 65.2
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-27 126.7 89 65.2
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.2e-27 126.7 80 71.2
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.2e-27 126.7 80 71.2
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.2e-27 126.7 92 64.1
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.2e-27 126.7 78 73.1
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.2e-27 126.7 92 67.4
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.6e-27 126.3 78 73.1
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.6e-27 126.3 78 73.1
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.6e-27 126.3 78 73.1
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.6e-27 126.3 78 73.1
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.6e-27 126.3 80 68.8
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 2.1e-27 125.9 83 69.9
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.1e-27 125.9 96 60.4
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 2.8e-27 125.6 78 73.1
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 3.6e-27 125.2 89 65.2
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 3.6e-27 125.2 89 65.2
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 3.6e-27 125.2 79 68.4
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 4.7e-27 124.8 78 71.8
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 4.7e-27 124.8 76 73.7
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 4.7e-27 124.8 76 73.7
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 4.7e-27 124.8 83 69.9
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 4.7e-27 124.8 78 71.8
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 4.7e-27 124.8 78 71.8
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 6.1e-27 124.4 78 71.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 6.1e-27 124.4 104 57.7
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 6.1e-27 124.4 88 67.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 6.1e-27 124.4 90 65.6
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 6.1e-27 124.4 78 70.5
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 6.1e-27 124.4 78 71.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 6.1e-27 124.4 93 62.4
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 6.1e-27 124.4 104 57.7
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 8.0e-27 124.0 80 68.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 8.0e-27 124.0 78 71.8
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 8.0e-27 124.0 90 65.6
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.4e-26 123.2 76 72.4
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.4e-26 123.2 82 69.5
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.4e-26 123.2 78 70.5
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.4e-26 123.2 79 70.9
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.4e-26 123.2 80 67.5
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.4e-26 123.2 89 66.3
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.8e-26 122.9 77 71.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.8e-26 122.9 76 71.1
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.8e-26 122.9 78 69.2
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.8e-26 122.9 78 69.2
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 2.3e-26 122.5 82 68.3
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.3e-26 122.5 81 67.9
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.3e-26 122.5 78 70.5
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 2.3e-26 122.5 90 64.4
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 3.0e-26 122.1 78 67.9
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 3.0e-26 122.1 133 49.6
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 3.0e-26 122.1 96 61.5
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 3.0e-26 122.1 83 68.7
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 3.0e-26 122.1 83 67.5
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.0e-26 121.7 83 68.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 5.2e-26 121.3 92 63.0
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 5.2e-26 121.3 87 65.5
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 6.8e-26 120.9 82 68.3
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 8.9e-26 120.6 93 60.2
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.2e-25 120.2 87 62.1
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.5e-25 119.8 78 67.9
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.5e-25 119.8 78 67.9
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.5e-25 119.8 89 64.0
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.5e-25 119.8 89 61.8
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.5e-25 119.8 89 61.8
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.5e-25 119.8 89 61.8
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 2.6e-25 119.0 101 56.4
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 2.6e-25 119.0 96 62.5
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 9.8e-25 117.1 80 63.8
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.3e-24 116.7 83 66.3
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 2.2e-24 115.9 77 67.5
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.9e-24 115.5 78 64.1
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 3.7e-24 115.2 75 68.0
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.4e-23 112.5 85 61.2
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.2e-23 112.1 107 55.1
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 9.2e-23 110.5 99 54.5
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 3.5e-22 108.6 63 76.2
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 6.0e-22 107.8 69 68.1
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 5.0e-21 104.8 63 73.0
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.3e-20 102.1 65 67.7
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.6e-19 99.8 64 64.1
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.8e-19 99.0 65 66.2
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 3.6e-19 98.6 65 64.6
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 2.3e-18 95.9 64 65.6
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 6.8e-18 94.4 76 59.2
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 6.8e-18 94.4 112 45.5
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.5e-17 93.2 65 60.0
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 2.6e-17 92.4 62 64.5
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 7.5e-17 90.9 109 45.0
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 2.9e-16 89.0 63 61.9
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 6.4e-16 87.8 96 46.9
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.4e-15 85.9 63 60.3
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 3.5e-14 82.0 80 50.0
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.6e-14 81.6 53 64.2
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.7e-13 79.7 78 47.4
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 7.3e-12 74.3 52 65.4
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 2.1e-11 72.8 88 44.3
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 2.0e-09 66.2 64 53.1
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 7.5e-09 64.3 44 63.6
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.3e-08 63.5 31 80.6
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.7e-08 63.2 46 60.9
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.7e-08 62.0 44 63.6
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 8.3e-08 60.8 54 57.4


User provided reference genes

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