Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 7.7e-27 123.2 70 100.0
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 1.7e-13 79.0 70 70.0
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.7e-13 79.0 70 71.4
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 2.2e-13 78.6 60 76.7
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 2.8e-13 78.2 66 72.7
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 2.8e-13 78.2 60 75.0
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 2.8e-13 78.2 60 75.0
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 2.8e-13 78.2 70 68.6
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 6.3e-13 77.0 60 75.0
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.1e-12 76.3 70 70.0
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.4e-12 75.9 70 70.0
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 2.4e-12 75.1 68 67.6
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.4e-12 75.1 71 69.0
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.4e-12 75.1 70 65.7
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 4.1e-12 74.3 58 69.0
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.1e-12 74.3 70 64.3
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 5.3e-12 73.9 61 75.4
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 5.3e-12 73.9 60 68.3
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.0e-12 73.6 60 71.7
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 7.0e-12 73.6 72 65.3
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.6e-11 72.4 70 64.3
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.0e-11 72.0 48 81.2
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.0e-11 72.0 48 81.2
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.6e-11 71.6 56 73.2
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 2.6e-11 71.6 66 66.7
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 2.6e-11 71.6 71 69.0
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.5e-11 71.2 50 82.0
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 3.5e-11 71.2 66 66.7
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 3.5e-11 71.2 72 65.3
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 5.9e-11 70.5 70 68.6
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.9e-11 70.5 54 74.1
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 5.9e-11 70.5 72 68.1
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 5.9e-11 70.5 65 67.7
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 5.9e-11 70.5 60 68.3
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 7.7e-11 70.1 58 70.7
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 7.7e-11 70.1 54 75.9
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.0e-10 69.7 49 81.6
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 1.0e-10 69.7 54 72.2
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.0e-10 69.7 70 68.6
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 1.3e-10 69.3 54 72.2
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.3e-10 69.3 48 83.3
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.3e-10 69.3 49 81.6
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 1.3e-10 69.3 52 76.9
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 1.7e-10 68.9 54 72.2
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.7e-10 68.9 57 70.2
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 1.7e-10 68.9 54 72.2
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.7e-10 68.9 58 67.2
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 2.9e-10 68.2 48 81.2
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 3.8e-10 67.8 49 79.6
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 3.8e-10 67.8 48 81.2
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 3.8e-10 67.8 56 67.9
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 6.5e-10 67.0 66 66.7
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 6.5e-10 67.0 48 77.1
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 6.5e-10 67.0 55 72.7
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 6.5e-10 67.0 53 73.6
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 6.5e-10 67.0 52 75.0
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 6.5e-10 67.0 52 73.1
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 8.5e-10 66.6 48 81.2
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 8.5e-10 66.6 48 81.2
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 8.5e-10 66.6 48 81.2
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.1e-09 66.2 48 79.2
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.1e-09 66.2 54 70.4
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.1e-09 66.2 70 60.0
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 1.5e-09 65.9 61 67.2
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 2.5e-09 65.1 62 64.5
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 2.5e-09 65.1 70 62.9
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 2.5e-09 65.1 53 71.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 3.2e-09 64.7 57 66.7
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.2e-09 64.3 46 76.1
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.2e-09 64.3 50 74.0
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 5.5e-09 63.9 48 77.1
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 7.2e-09 63.5 54 70.4
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 7.2e-09 63.5 66 60.6
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 9.4e-09 63.2 45 82.2
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 9.4e-09 63.2 56 64.3
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 9.4e-09 63.2 48 75.0
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 9.4e-09 63.2 56 64.3
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 9.4e-09 63.2 60 66.7
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 9.4e-09 63.2 58 67.2
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.2e-08 62.8 48 75.0
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.2e-08 62.8 49 73.5
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.2e-08 62.8 49 73.5
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 1.6e-08 62.4 48 72.9
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 1.6e-08 62.4 66 59.1
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 1.6e-08 62.4 60 70.0
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.6e-08 62.4 55 69.1
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.6e-08 62.4 56 66.1
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.6e-08 62.4 51 70.6
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 2.1e-08 62.0 54 66.7
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.1e-08 62.0 60 61.7
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.1e-08 62.0 48 72.9
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 3.6e-08 61.2 45 77.8
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 3.6e-08 61.2 67 58.2
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 4.7e-08 60.8 68 61.8
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 4.7e-08 60.8 66 57.6
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 4.7e-08 60.8 50 72.0
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 6.1e-08 60.5 45 77.8
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.0e-07 59.7 47 72.3
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 1.0e-07 59.7 45 77.8
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 1.0e-07 59.7 55 65.5
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 1.0e-07 59.7 70 61.4
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 1.0e-07 59.7 67 61.2
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 1.0e-07 59.7 43 81.4
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 1.0e-07 59.7 64 64.1
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.4e-07 59.3 48 70.8
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 1.4e-07 59.3 55 67.3
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 2.3e-07 58.5 44 77.3
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 3.0e-07 58.2 46 71.7
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 4.0e-07 57.8 45 71.1
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 8.8e-07 56.6 44 75.0
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 1.2e-06 56.2 41 80.5
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 1.2e-06 56.2 41 80.5
TAR633G2004 Trochodendron aralioides HOM05D005458 ORTHO05D005672 1.5e-06 55.8 47 72.3
FAN12G0355 Fragaria x ananassa HOM05D005458 ORTHO05D005672 2.0e-06 55.5 38 76.3
FAN17G0397 Fragaria x ananassa HOM05D005458 ORTHO05D005672 2.0e-06 55.5 37 78.4
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 2.0e-06 55.5 71 56.3
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 4.4e-06 54.3 40 80.0
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 5.7e-06 53.9 44 72.7


User provided reference genes

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