Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 8.4e-44 179.9 85 100.0
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.7e-20 102.4 59 72.9
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 6.5e-20 100.5 58 72.4
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 4.2e-19 97.8 77 63.6
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 5.5e-19 97.4 74 62.2
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 7.1e-19 97.1 75 61.3
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 9.3e-19 96.7 80 57.5
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.2e-18 96.3 77 59.7
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.2e-18 96.3 76 61.8
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.2e-18 96.3 74 62.2
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.6e-18 95.9 74 60.8
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.6e-18 95.9 77 61.0
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 1.6e-18 95.9 77 59.7
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.6e-18 95.9 77 59.7
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 2.1e-18 95.5 77 59.7
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.1e-18 95.5 77 59.7
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.1e-18 95.5 77 59.7
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 2.1e-18 95.5 52 76.9
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 3.5e-18 94.7 77 61.0
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 3.5e-18 94.7 74 62.2
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.5e-18 94.7 74 58.1
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 3.5e-18 94.7 74 62.2
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.6e-18 94.4 80 56.2
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 4.6e-18 94.4 80 56.2
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 4.6e-18 94.4 58 70.7
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 4.6e-18 94.4 54 72.2
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 4.6e-18 94.4 55 70.9
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 6.0e-18 94.0 65 63.1
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 6.0e-18 94.0 77 61.0
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 6.0e-18 94.0 58 70.7
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 6.0e-18 94.0 75 61.3
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 7.9e-18 93.6 74 59.5
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 7.9e-18 93.6 64 68.8
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.0e-17 93.2 66 63.6
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.8e-17 92.4 58 69.0
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.8e-17 92.4 55 69.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.8e-17 92.4 68 64.7
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.8e-17 92.4 66 62.1
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.8e-17 92.4 50 76.0
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.8e-17 92.4 50 76.0
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.8e-17 92.4 56 69.6
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.3e-17 92.0 73 57.5
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.0e-17 91.7 74 55.4
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.0e-17 91.7 54 75.9
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 3.0e-17 91.7 62 64.5
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.0e-17 91.7 46 82.6
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 3.9e-17 91.3 46 80.4
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 3.9e-17 91.3 61 65.6
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 3.9e-17 91.3 81 56.8
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 5.1e-17 90.9 72 59.7
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 5.1e-17 90.9 46 80.4
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 5.1e-17 90.9 76 57.9
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 5.1e-17 90.9 75 57.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 5.1e-17 90.9 75 58.7
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 6.7e-17 90.5 53 73.6
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 6.7e-17 90.5 72 59.7
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 6.7e-17 90.5 57 68.4
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.7e-17 90.5 50 74.0
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.7e-17 90.5 50 74.0
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 6.7e-17 90.5 57 68.4
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 8.7e-17 90.1 59 62.7
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 8.7e-17 90.1 45 82.2
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 8.7e-17 90.1 74 58.1
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.1e-16 89.7 65 60.0
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.1e-16 89.7 51 70.6
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.1e-16 89.7 57 68.4
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-16 89.7 46 78.3
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.1e-16 89.7 74 58.1
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.5e-16 89.4 46 80.4
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.5e-16 89.4 58 67.2
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 1.5e-16 89.4 58 69.0
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.5e-16 89.4 58 69.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.5e-16 89.4 50 74.0
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.5e-16 89.4 61 65.6
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.9e-16 89.0 47 74.5
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.9e-16 89.0 60 68.3
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.9e-16 89.0 46 80.4
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.9e-16 89.0 72 58.3
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.9e-16 89.0 72 58.3
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.9e-16 89.0 52 71.2
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.9e-16 89.0 52 73.1
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.9e-16 89.0 46 80.4
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.9e-16 89.0 75 57.3
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.9e-16 89.0 58 72.4
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.9e-16 89.0 75 57.3
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.5e-16 88.6 68 60.3
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 2.5e-16 88.6 46 76.1
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.5e-16 88.6 76 57.9
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 2.5e-16 88.6 76 57.9
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 2.5e-16 88.6 45 82.2
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.3e-16 88.2 75 56.0
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.3e-16 88.2 75 56.0
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 3.3e-16 88.2 46 78.3
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 3.3e-16 88.2 80 52.5
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 3.3e-16 88.2 56 67.9
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.3e-16 88.2 46 78.3
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 3.3e-16 88.2 71 57.7
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.3e-16 88.2 46 73.9
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 3.3e-16 88.2 56 69.6
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 4.3e-16 87.8 56 66.1
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 4.3e-16 87.8 46 78.3
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 4.3e-16 87.8 46 76.1
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.3e-16 87.8 46 80.4
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 4.3e-16 87.8 60 61.7
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 4.3e-16 87.8 46 78.3
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 5.7e-16 87.4 56 66.1
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.7e-16 87.4 57 64.9
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.7e-16 87.4 73 56.2
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 5.7e-16 87.4 49 73.5
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 7.4e-16 87.0 46 80.4
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 7.4e-16 87.0 60 68.3
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 7.4e-16 87.0 71 56.3
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 7.4e-16 87.0 46 78.3
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 7.4e-16 87.0 46 78.3
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 7.4e-16 87.0 46 78.3
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 7.4e-16 87.0 46 76.1
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 7.4e-16 87.0 45 82.2
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 7.4e-16 87.0 45 82.2
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 7.4e-16 87.0 76 57.9
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 7.4e-16 87.0 46 76.1
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.4e-16 87.0 46 76.1
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 7.4e-16 87.0 56 64.3
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 9.7e-16 86.7 51 74.5
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 9.7e-16 86.7 46 80.4
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 9.7e-16 86.7 46 73.9
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.3e-15 86.3 48 75.0
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.3e-15 86.3 46 76.1
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.3e-15 86.3 82 56.1
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.3e-15 86.3 82 56.1
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.3e-15 86.3 60 61.7
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.3e-15 86.3 46 76.1
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.3e-15 86.3 69 55.1
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 2.2e-15 85.5 46 78.3
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 2.2e-15 85.5 46 78.3
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.8e-15 85.1 80 48.8
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 2.8e-15 85.1 75 54.7
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.8e-15 85.1 75 53.3
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.8e-15 84.3 75 54.7
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 6.3e-15 84.0 73 53.4
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.1e-14 83.2 60 63.3
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.4e-14 82.0 74 56.8
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.3e-14 80.9 43 76.7
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 6.9e-14 80.5 42 76.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 9.0e-14 80.1 71 52.1
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.2e-13 79.7 50 70.0
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.0e-13 79.0 65 58.5
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.5e-13 77.8 46 69.6
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 4.5e-13 77.8 42 73.8
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.9e-13 77.4 67 56.7
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.9e-13 77.4 67 56.7
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 3.6e-10 68.2 52 59.6
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 3.9e-09 64.7 46 63.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 8.2e-07 57.0 28 82.1


User provided reference genes

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