Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 1.1e-34 149.4 74 100.0
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.3e-21 105.9 64 76.6
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 9.6e-20 99.8 67 67.2
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.3e-19 99.4 66 63.6
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.6e-19 99.0 64 67.2
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 2.8e-19 98.2 67 64.2
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.8e-19 98.2 67 65.7
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 4.8e-19 97.4 66 66.7
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.8e-19 97.4 58 74.1
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 6.2e-19 97.1 67 68.7
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 8.1e-19 96.7 65 66.2
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.1e-19 96.7 65 66.2
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.1e-18 96.3 67 67.2
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.1e-18 96.3 66 63.6
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-18 96.3 66 63.6
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-18 96.3 66 63.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-18 96.3 66 63.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-18 96.3 66 63.6
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.1e-18 96.3 66 63.6
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.4e-18 95.9 66 62.1
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.4e-18 95.9 67 64.2
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.8e-18 95.5 66 66.7
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.8e-18 95.5 68 69.1
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.8e-18 95.5 66 66.7
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.8e-18 95.5 68 69.1
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.8e-18 95.5 66 65.2
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 1.8e-18 95.5 66 63.6
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 2.4e-18 95.1 66 63.6
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 2.4e-18 95.1 64 67.2
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 2.4e-18 95.1 65 66.2
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 2.4e-18 95.1 68 66.2
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.4e-18 95.1 66 66.7
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.1e-18 94.7 66 65.2
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 3.1e-18 94.7 62 66.1
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 3.1e-18 94.7 68 66.2
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.1e-18 94.7 66 62.1
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.1e-18 94.7 66 62.1
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.1e-18 94.7 66 62.1
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 3.1e-18 94.7 66 63.6
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.0e-18 94.4 66 65.2
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 5.3e-18 94.0 67 61.2
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 5.3e-18 94.0 67 61.2
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 5.3e-18 94.0 66 63.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.3e-18 94.0 63 63.5
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 5.3e-18 94.0 59 69.5
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.3e-18 94.0 65 63.1
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.3e-18 94.0 65 63.1
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 5.3e-18 94.0 67 61.2
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 5.3e-18 94.0 66 62.1
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 5.3e-18 94.0 62 66.1
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 5.3e-18 94.0 66 62.1
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.3e-18 94.0 65 64.6
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 6.9e-18 93.6 59 69.5
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 6.9e-18 93.6 66 60.6
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 6.9e-18 93.6 66 62.1
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 6.9e-18 93.6 65 63.1
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 9.0e-18 93.2 67 64.2
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 9.0e-18 93.2 66 65.2
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 9.0e-18 93.2 66 62.1
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 9.0e-18 93.2 65 64.6
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 9.0e-18 93.2 65 63.1
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 9.0e-18 93.2 66 62.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 9.0e-18 93.2 62 66.1
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 9.0e-18 93.2 67 62.7
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.2e-17 92.8 66 60.6
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.2e-17 92.8 59 66.1
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.2e-17 92.8 62 62.9
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.5e-17 92.4 66 62.1
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.5e-17 92.4 66 63.6
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.0e-17 92.0 66 60.6
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.0e-17 92.0 66 60.6
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.0e-17 92.0 62 64.5
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.0e-17 92.0 62 64.5
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 2.0e-17 92.0 62 64.5
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 2.0e-17 92.0 66 63.6
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.0e-17 92.0 66 63.6
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 2.6e-17 91.7 59 66.1
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 2.6e-17 91.7 66 62.1
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 2.6e-17 91.7 62 64.5
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 2.6e-17 91.7 58 65.5
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 3.4e-17 91.3 66 62.1
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 3.4e-17 91.3 59 67.8
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 3.4e-17 91.3 59 64.4
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 3.4e-17 91.3 59 64.4
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 3.4e-17 91.3 58 67.2
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 4.5e-17 90.9 66 60.6
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 5.8e-17 90.5 62 64.5
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 5.8e-17 90.5 59 64.4
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 5.8e-17 90.5 66 62.1
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 5.8e-17 90.5 66 62.1
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 5.8e-17 90.5 59 64.4
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.8e-17 90.5 62 62.9
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 7.6e-17 90.1 58 67.2
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.6e-17 90.1 65 64.6
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 9.9e-17 89.7 67 61.2
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 9.9e-17 89.7 68 63.2
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 9.9e-17 89.7 65 64.6
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.3e-16 89.4 66 59.1
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-16 89.4 71 63.4
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.3e-16 89.4 66 62.1
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.7e-16 89.0 67 58.2
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 2.2e-16 88.6 61 67.2
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.9e-16 88.2 66 62.1
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 3.8e-16 87.8 59 64.4
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 3.8e-16 87.8 58 65.5
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 3.8e-16 87.8 66 60.6
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 3.8e-16 87.8 66 60.6
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 4.9e-16 87.4 65 63.1
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 4.9e-16 87.4 65 63.1
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 4.9e-16 87.4 65 63.1
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 4.9e-16 87.4 65 63.1
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.1e-15 86.3 64 59.4
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.1e-15 86.3 65 61.5
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.4e-15 85.9 67 58.2
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-15 85.5 58 67.2
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-15 85.5 58 67.2
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.9e-15 85.5 58 67.2
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.9e-15 85.5 58 67.2
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.9e-15 85.5 58 67.2
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.9e-15 85.5 58 67.2
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 2.4e-15 85.1 58 65.5
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 3.2e-15 84.7 62 58.1
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 3.2e-15 84.7 74 56.8
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.2e-15 84.3 59 62.7
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 5.4e-15 84.0 59 64.4
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 5.4e-15 84.0 59 64.4
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.1e-15 83.6 78 55.1
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 9.3e-15 83.2 56 62.5
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 66.1
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 66.1
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 66.1
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 66.1
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 66.1
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 66.1
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.7e-14 81.6 59 59.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.5e-14 81.3 82 52.4
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 4.6e-14 80.9 90 46.7
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 1.0e-13 79.7 62 56.5
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.3e-13 79.3 54 66.7
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.3e-13 79.3 70 55.7
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.3e-13 79.3 87 47.1
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.3e-13 78.6 59 55.9
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 3.0e-13 78.2 88 45.5
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 3.0e-13 78.2 95 43.2
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.9e-13 77.8 62 54.8
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.7e-13 77.0 55 63.6
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.7e-13 77.0 63 55.6
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 6.7e-13 77.0 64 54.7
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 8.7e-13 76.6 50 66.0
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 8.7e-13 76.6 60 58.3
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.7e-13 76.6 53 64.2
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 8.7e-13 76.6 86 46.5
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.1e-12 76.3 47 70.2
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-12 76.3 54 61.1
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.1e-12 76.3 55 61.8
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.5e-12 75.1 55 60.0
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.5e-12 75.1 59 59.3
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 2.5e-12 75.1 54 61.1
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 5.6e-12 73.9 67 53.7
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 7.4e-12 73.6 50 62.0
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 9.6e-12 73.2 56 60.7
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 9.6e-12 73.2 54 57.4
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.3e-11 72.8 55 58.2
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.3e-11 72.8 55 56.4
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.6e-11 72.4 54 57.4
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.8e-11 71.6 60 53.3
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 4.8e-11 70.9 50 60.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 8.1e-11 70.1 49 63.3
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.1e-10 69.7 46 60.9
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 4.0e-10 67.8 53 58.5
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.2e-09 66.2 40 72.5
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.4e-09 64.7 55 52.7
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.2e-08 62.0 47 63.8
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.9e-08 61.6 54 46.3
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 6.5e-08 60.5 47 57.4
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.4e-07 59.3 38 65.8
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 1.6e-06 55.8 54 44.4
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 6.0e-06 53.9 42 57.1


User provided reference genes

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