Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 0.0e+00 1464.1 791 100.0
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 6.3e-210 734.9 724 56.5
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 4.5e-208 728.8 720 57.5
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 7.0e-193 678.3 704 50.6
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.6e-171 606.7 718 46.1
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 6.4e-170 602.1 523 55.6
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 4.1e-169 599.4 723 45.6
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.2e-168 597.8 620 50.2
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.5e-166 590.9 591 49.9
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 7.3e-166 588.6 717 44.4
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.6e-165 587.4 720 45.3
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 1.6e-165 587.4 576 50.7
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 8.0e-165 585.1 571 51.0
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 3.1e-164 583.2 576 50.5
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.0e-164 582.8 712 44.7
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 8.9e-164 581.6 746 43.6
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-163 581.3 736 43.9
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-163 580.9 575 49.7
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.2e-162 577.0 578 49.7
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 6.4e-162 575.5 720 42.5
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.1e-161 574.7 587 49.2
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 3.5e-160 569.7 683 44.9
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 4.6e-160 569.3 589 46.9
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 4.6e-160 569.3 724 44.6
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 6.0e-160 568.9 571 48.7
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 7.8e-160 568.5 774 42.2
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 7.8e-160 568.5 587 48.4
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.7e-159 567.4 578 49.5
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 3.9e-159 566.2 718 43.9
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 6.6e-159 565.5 578 48.8
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 6.6e-159 565.5 674 44.7
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-158 564.7 718 43.7
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.5e-158 564.3 742 43.3
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 2.5e-158 563.5 722 43.6
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 4.3e-158 562.8 572 49.3
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.6e-157 560.8 709 43.0
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 1.6e-157 560.8 587 47.0
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.7e-157 559.3 707 44.6
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 4.7e-157 559.3 714 43.8
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 4.7e-157 559.3 709 43.0
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 8.1e-157 558.5 704 44.5
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 8.1e-157 558.5 570 48.9
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 8.1e-157 558.5 595 46.9
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.4e-156 557.8 583 47.3
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 3.4e-155 553.1 708 43.5
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 4.4e-155 552.7 583 47.3
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 6.4e-154 548.9 587 47.9
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.1e-153 548.1 585 47.9
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.1e-153 548.1 573 48.2
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.4e-153 547.7 709 43.2
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.4e-153 547.0 806 40.8
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 2.4e-153 547.0 708 42.7
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 3.2e-153 546.6 585 47.9
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 7.1e-153 545.4 707 44.4
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 1.2e-152 544.7 568 48.2
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 3.5e-152 543.1 584 47.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.6e-152 542.7 562 48.8
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 6.0e-152 542.3 572 48.1
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 6.0e-152 542.3 716 42.0
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.3e-151 541.2 580 46.9
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.7e-151 540.8 712 44.8
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.6e-151 538.9 715 42.2
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.1e-150 538.1 594 47.1
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.2e-149 534.6 500 52.4
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 6.2e-149 532.3 571 47.6
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 8.1e-149 531.9 729 42.4
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 2.4e-148 530.4 583 44.9
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 4.0e-148 529.6 724 42.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 7.6e-147 525.4 684 43.3
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 6.4e-146 522.3 570 46.8
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 4.6e-144 516.2 590 45.4
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 8.7e-143 511.9 572 45.8
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.8e-140 504.2 631 42.5
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 3.1e-140 503.4 653 42.6
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 4.0e-140 503.1 571 45.0
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 9.0e-140 501.9 568 44.0
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.6e-139 500.4 524 48.3
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 5.8e-139 499.2 561 45.1
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 8.4e-138 495.4 589 43.3
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.2e-137 493.0 588 43.2
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 9.3e-137 491.9 575 44.5
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.1e-136 490.7 583 43.4
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.6e-136 489.6 733 39.2
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 3.3e-134 483.4 715 39.7
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 4.3e-134 483.0 575 44.0
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.1e-133 480.7 609 42.5
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.8e-132 477.6 495 50.9
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 9.0e-132 475.3 384 58.3
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.5e-126 458.0 708 38.7
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 4.9e-122 443.0 603 41.3
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 6.5e-122 442.6 1089 31.0
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.6e-120 436.4 678 38.5
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 8.7e-119 432.2 570 40.4
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 8.2e-117 425.6 378 52.4
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 6.9e-116 422.5 528 42.4
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.2e-115 421.8 769 36.3
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 4.5e-115 419.9 634 37.4
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 3.8e-114 416.8 291 65.3
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 2.8e-109 400.6 429 47.1
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 3.7e-109 400.2 745 35.7
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.5e-107 394.8 521 42.8
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 1.0e-103 382.1 311 56.6
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 1.4e-103 381.7 311 57.6
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 3.1e-100 370.5 392 48.7
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.9e-90 337.4 335 50.4
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 2.7e-88 330.9 542 38.6
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 6.1e-88 329.7 534 37.5
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.0e-87 328.9 661 33.6
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 6.3e-85 319.7 336 48.8
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.5e-81 308.5 325 49.5
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.2e-79 300.1 532 34.4
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.1e-76 289.3 486 38.1
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 2.7e-75 287.7 350 42.9
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 8.6e-66 256.1 474 33.3
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 2.5e-57 228.0 256 47.7
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 3.6e-56 224.2 145 69.0
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.5e-54 218.8 213 48.8
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.6e-51 208.8 153 62.7
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.0e-51 208.4 197 52.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 6.8e-47 193.4 154 54.5
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-46 192.6 514 31.9
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.8e-46 189.5 135 63.0
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 7.1e-44 183.3 146 56.8
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 2.7e-43 181.4 459 31.6
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 3.5e-43 181.0 198 50.0
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 1.2e-40 172.6 257 38.9
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 2.8e-40 171.4 283 38.5
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 4.4e-38 164.1 289 32.5
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.4e-36 159.1 415 30.8
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 8.4e-29 133.3 231 38.5
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.1e-27 128.6 90 63.3
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 5.6e-25 120.6 116 49.1
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 7.3e-25 120.2 90 61.1
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 7.3e-25 120.2 156 47.4
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.4e-22 111.3 82 58.5
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.2e-20 104.8 182 35.2
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.2e-19 102.8 82 53.7
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 7.9e-19 100.1 314 29.0
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.3e-18 98.6 90 54.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.5e-17 95.1 103 46.6
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 4.3e-17 94.4 132 37.1
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.3e-16 92.8 92 51.1
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 2.0e-14 85.5 188 31.4
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.5e-14 84.3 79 57.0
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 5.8e-14 84.0 68 51.5
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-12 79.7 68 52.9
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.4e-12 79.3 127 37.8
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.5e-09 68.6 93 41.9
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.5e-06 57.8 89 40.4


User provided reference genes

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