Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0074s0004 Marchantia polymorpha HOM05D003525 ORTHO05D004578 1.4e-271 939.1 521 100.0
Pp3c4_1720 Physcomitrium patens HOM05D003525 ORTHO05D004578 7.7e-156 554.7 523 62.1
SEGI_09930 Sequoiadendron giganteum HOM05D003525 ORTHO05D004578 2.3e-144 516.5 517 54.7
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 3.7e-142 509.2 466 56.4
SMO174G0095 Selaginella moellendorffii HOM05D003525 ORTHO05D004578 6.3e-142 508.4 480 60.2
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 2.4e-141 506.5 482 55.6
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 3.1e-141 506.1 465 56.1
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 5.9e-140 501.9 498 53.4
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 5.9e-140 501.9 482 54.6
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 2.2e-139 500.0 486 55.6
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 5.0e-139 498.8 512 52.5
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 8.5e-139 498.0 491 53.6
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 2.5e-138 496.5 496 54.0
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 5.5e-138 495.4 464 55.8
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 7.2e-138 495.0 467 55.9
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 9.4e-138 494.6 469 57.4
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 1.2e-137 494.2 468 55.3
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 2.7e-137 493.0 463 56.2
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 2.7e-137 493.0 465 56.6
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 2.7e-137 493.0 486 53.5
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 2.7e-137 493.0 467 58.0
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 3.6e-137 492.7 516 53.3
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 3.6e-137 492.7 461 55.5
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 8.0e-137 491.5 467 55.7
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 8.0e-137 491.5 462 56.5
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 8.0e-137 491.5 470 55.7
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 8.0e-137 491.5 486 54.9
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 1.4e-136 490.7 465 53.5
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 1.8e-136 490.3 481 57.6
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 2.3e-136 490.0 463 57.9
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 2.3e-136 490.0 515 54.8
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.3e-136 490.0 481 57.6
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 2.3e-136 490.0 516 53.1
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 3.0e-136 489.6 515 54.8
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 3.0e-136 489.6 459 56.4
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 3.0e-136 489.6 481 56.8
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 4.0e-136 489.2 513 55.0
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 5.2e-136 488.8 463 55.5
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 6.8e-136 488.4 466 55.2
Hund06230 Selenicereus undatus HOM05D003525 ORTHO05D004578 8.8e-136 488.0 512 53.5
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 2.6e-135 486.5 463 57.5
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 2.6e-135 486.5 462 56.7
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 3.4e-135 486.1 515 52.4
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 3.4e-135 486.1 484 52.9
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 4.4e-135 485.7 515 51.7
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 5.7e-135 485.3 498 53.2
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 5.7e-135 485.3 499 53.7
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 7.5e-135 485.0 514 53.5
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 7.5e-135 485.0 464 58.8
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 7.5e-135 485.0 515 53.4
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 7.5e-135 485.0 464 56.0
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 1.3e-134 484.2 466 56.2
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 1.3e-134 484.2 487 52.4
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.2e-134 483.4 514 54.1
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 2.8e-134 483.0 466 55.4
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 3.7e-134 482.6 464 55.6
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 3.7e-134 482.6 476 55.9
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 3.7e-134 482.6 474 55.5
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 4.8e-134 482.3 466 54.7
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 4.8e-134 482.3 466 54.7
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 8.3e-134 481.5 471 54.6
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 8.3e-134 481.5 487 53.0
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 1.1e-133 481.1 459 59.0
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.1e-133 481.1 504 51.0
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 1.4e-133 480.7 498 53.0
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 3.1e-133 479.6 503 53.7
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 4.1e-133 479.2 515 52.4
ClCG02G005050 Citrullus lanatus HOM05D003525 ORTHO05D004578 4.1e-133 479.2 517 49.3
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 4.1e-133 479.2 464 56.2
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 9.1e-133 478.0 465 57.6
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 9.1e-133 478.0 501 52.7
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 1.2e-132 477.6 499 54.9
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 1.6e-132 477.2 514 52.7
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 2.0e-132 476.9 465 57.6
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 2.7e-132 476.5 504 50.6
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 2.7e-132 476.5 503 53.9
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 4.5e-132 475.7 447 56.8
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 5.9e-132 475.3 517 52.8
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 5.9e-132 475.3 466 53.2
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 5.9e-132 475.3 466 54.1
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 7.7e-132 474.9 503 52.7
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 1.0e-131 474.6 465 57.2
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 2.9e-131 473.0 462 56.9
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 2.9e-131 473.0 514 51.9
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 6.5e-131 471.9 496 50.8
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 6.5e-131 471.9 466 52.1
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 6.5e-131 471.9 515 49.7
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 8.5e-131 471.5 481 53.0
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.1e-130 471.1 464 52.8
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 1.9e-130 470.3 515 53.4
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 1.9e-130 470.3 516 52.9
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.5e-130 469.9 463 57.2
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 4.2e-130 469.2 471 52.7
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 4.2e-130 469.2 497 51.1
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 4.2e-130 469.2 497 51.1
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 5.5e-130 468.8 467 53.7
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 5.5e-130 468.8 467 55.7
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 1.2e-129 467.6 514 48.6
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 1.6e-129 467.2 516 49.6
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 1.6e-129 467.2 517 50.3
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 1.6e-129 467.2 467 52.9
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 3.6e-129 466.1 517 49.5
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 3.6e-129 466.1 516 51.2
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 4.7e-129 465.7 515 50.1
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 4.7e-129 465.7 516 49.8
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 6.1e-129 465.3 499 51.9
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 6.1e-129 465.3 462 55.2
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 6.1e-129 465.3 486 50.6
HPP92_017152 Vanilla planifolia HOM05D003525 ORTHO05D004578 6.1e-129 465.3 518 50.0
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 8.0e-129 464.9 519 50.5
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 1.0e-128 464.5 516 48.4
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 2.3e-128 463.4 516 49.2
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 2.3e-128 463.4 517 52.8
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 2.3e-128 463.4 504 52.6
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 3.0e-128 463.0 515 50.5
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 4.0e-128 462.6 516 51.2
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 4.0e-128 462.6 475 53.1
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 4.0e-128 462.6 464 54.5
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 4.0e-128 462.6 516 49.8
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 6.8e-128 461.8 513 47.8
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 8.8e-128 461.5 517 50.3
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 8.8e-128 461.5 517 51.5
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 2.6e-127 459.9 519 50.9
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 2.6e-127 459.9 519 50.9
Zm00001eb055650 Zea mays HOM05D003525 ORTHO05D004578 2.6e-127 459.9 509 52.8
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 5.7e-127 458.8 514 51.4
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 7.5e-127 458.4 515 51.1
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 7.5e-127 458.4 514 52.3
Os03g0722600 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 9.8e-127 458.0 509 53.8
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.3e-126 457.6 504 53.4
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 2.8e-126 456.4 496 48.2
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 1.1e-125 454.5 415 57.1
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 2.4e-125 453.4 484 49.2
unitig_8.g3568 Utricularia gibba HOM05D003525 ORTHO05D004578 2.4e-125 453.4 515 48.3
HanXRQChr16g0505731 Helianthus annuus HOM05D003525 ORTHO05D004578 5.4e-125 452.2 468 52.1
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 7.0e-125 451.8 467 51.4
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 1.2e-124 451.1 498 51.4
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 1.2e-124 451.1 468 52.4
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 1.6e-124 450.7 454 53.5
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 2.7e-124 449.9 437 54.9
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 3.5e-124 449.5 514 52.1
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 2.9e-123 446.4 459 54.7
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 5.0e-123 445.7 528 46.4
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 4.2e-122 442.6 515 48.2
Os08g0447900 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 1.2e-121 441.0 515 48.9
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 1.4e-120 437.6 481 48.6
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 4.4e-119 432.6 489 50.1
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 4.4e-119 432.6 465 52.3
CBR_g21060 Chara braunii HOM05D003525 ORTHO05D004578 1.7e-118 430.6 479 48.4
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 4.1e-117 426.0 513 50.5
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 7.0e-117 425.2 471 49.3
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 7.0e-117 425.2 466 50.2
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 5.0e-115 419.1 452 52.2
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 7.3e-114 415.2 474 52.5
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 1.6e-113 414.1 446 52.2
Zm00001eb215890 Zea mays HOM05D003525 ORTHO05D004578 2.8e-113 413.3 405 58.0
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 1.2e-108 397.9 462 48.1
PRCOL_00002324 Prasinoderma coloniale HOM05D003525 ORTHO05D004578 3.5e-108 396.4 519 46.4
MCO10G181 Micromonas commoda HOM05D003525 ORTHO05D004578 7.8e-108 395.2 524 44.5
unitig_22.g5174 Utricularia gibba HOM05D003525 ORTHO05D004578 8.9e-104 381.7 516 42.2
MELO3C012526.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.6e-100 370.9 434 45.6
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 1.6e-100 370.9 431 48.5
Cpa.g.sc62.144 Carica papaya HOM05D003525 ORTHO05D004578 4.1e-93 346.3 503 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2699 Anthoceros agrestis HOM05D003525 ORTHO05D004578 3.9e-91 339.7 353 56.9
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 6.2e-89 332.4 467 42.8
Actinidia27898 Actinidia chinensis HOM05D003525 ORTHO05D004578 9.3e-77 292.0 329 55.0
Cre06.g304100 Chlamydomonas reinhardtii HOM05D003525 ORTHO05D004578 3.9e-67 260.0 530 37.9
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 4.8e-49 199.9 504 31.9
TPR.G333 Trifolium pratense HOM05D003525 ORTHO05D004578 3.0e-43 180.6 140 56.4
MELO3C014785.2 Cucumis melo HOM05D003525 ORTHO05D004578 5.3e-40 169.9 142 55.6
MELO3C019736.2 Cucumis melo HOM05D003525 ORTHO05D004578 4.8e-33 146.7 121 57.0
Actinidia27897 Actinidia chinensis HOM05D003525 ORTHO05D004578 8.5e-30 136.0 128 48.4
Actinidia08229 Actinidia chinensis HOM05D003525 ORTHO05D019487 1.7e-25 121.7 78 71.8
Nn2g12770 Nelumbo nucifera HOM05D003525 ORTHO05D019487 8.2e-25 119.4 87 70.1
Cfa027286 Carpinus fangiana HOM05D003525 ORTHO05D121739 4.7e-20 103.6 232 29.7
HPP92_017436 Vanilla planifolia HOM05D000653 ORTHO05D002177 1.4e-19 102.1 116 45.7
MBI16_g36558_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 9.8e-18 95.9 219 33.8
TPR.G14489 Trifolium pratense HOM05D003525 ORTHO05D004578 1.7e-17 95.1 82 56.1
C07p60610 Brassica napus HOM05D003525 ORTHO05D019487 6.3e-17 93.2 71 64.8
ECA234G4333 Erigeron canadensis HOM05D003525 ORTHO05D004578 1.6e-15 88.6 58 62.1
Ah.12g055710 Amaranthus hybridus HOM05D001818 ORTHO05D001780 1.5e-10 72.0 111 41.4
Atru.chr7.1490 Acer truncatum HOM05D003525 ORTHO05D037886 1.7e-09 68.6 57 52.6
A03p62940 Brassica napus HOM05D003525 ORTHO05D019487 3.5e-07 60.8 47 57.4
BraA03t15369Z Brassica rapa HOM05D003525 ORTHO05D019487 3.5e-07 60.8 47 57.4
BolC7t46490H Brassica oleracea HOM05D003525 ORTHO05D019487 2.3e-06 58.2 36 72.2


User provided reference genes

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