Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 6.6e-182 640.6 324 100.0
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 1.6e-66 257.3 286 44.1
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.0e-65 254.6 257 47.5
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.5e-64 250.0 239 47.7
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 7.3e-64 248.4 236 47.9
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 9.6e-64 248.1 236 48.3
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 9.6e-64 248.1 273 45.1
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 9.6e-64 248.1 268 46.6
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 9.6e-64 248.1 236 47.9
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.6e-63 247.3 229 51.1
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.6e-63 246.1 302 43.0
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 3.6e-63 246.1 291 42.6
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 3.6e-63 246.1 231 48.5
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 8.1e-63 245.0 248 46.8
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.4e-62 244.2 253 47.4
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.8e-62 243.8 296 41.2
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.4e-62 243.4 229 49.8
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.1e-62 243.0 229 49.3
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 4.0e-62 242.7 228 48.7
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.2e-61 241.1 276 44.2
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.2e-61 241.1 275 44.7
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.0e-61 240.4 281 43.1
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 3.4e-61 239.6 290 41.7
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 5.8e-61 238.8 253 46.2
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 5.8e-61 238.8 229 48.0
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 7.6e-61 238.4 286 42.0
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 9.9e-61 238.0 251 44.6
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.7e-60 237.3 277 45.5
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.7e-60 237.3 264 44.3
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.2e-60 236.9 268 42.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 2.9e-60 236.5 230 47.4
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 4.9e-60 235.7 230 49.1
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 4.9e-60 235.7 257 44.0
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 4.9e-60 235.7 298 41.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 4.9e-60 235.7 231 45.0
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 6.4e-60 235.3 259 42.9
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 6.4e-60 235.3 251 44.6
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 8.4e-60 235.0 289 42.2
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 8.4e-60 235.0 239 46.0
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 8.4e-60 235.0 229 48.0
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.1e-59 234.6 230 47.8
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.4e-59 234.2 229 47.2
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.9e-59 233.8 275 43.6
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.9e-59 233.8 230 44.8
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.9e-59 233.8 235 46.4
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.2e-59 233.0 230 46.5
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 3.2e-59 233.0 235 46.4
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 4.2e-59 232.6 255 47.1
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 4.2e-59 232.6 279 41.2
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 4.2e-59 232.6 265 43.0
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 4.2e-59 232.6 272 41.9
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 5.4e-59 232.3 271 41.3
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 5.4e-59 232.3 268 42.5
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 7.1e-59 231.9 259 46.7
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 7.1e-59 231.9 254 45.3
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 7.1e-59 231.9 318 42.1
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 7.1e-59 231.9 282 41.8
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.2e-58 231.1 268 43.7
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 4.6e-58 229.2 264 43.2
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 6.0e-58 228.8 259 42.5
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 7.8e-58 228.4 279 41.2
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 7.8e-58 228.4 255 44.3
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.3e-57 227.6 270 43.7
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.3e-57 227.6 250 45.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.3e-57 227.6 298 39.3
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.3e-57 226.9 229 44.5
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.3e-57 226.9 284 39.4
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 2.3e-57 226.9 230 47.4
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 3.0e-57 226.5 232 44.4
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 3.9e-57 226.1 230 46.1
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 3.9e-57 226.1 257 43.6
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 8.7e-57 224.9 230 47.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 8.7e-57 224.9 230 47.0
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.1e-56 224.6 259 41.7
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.5e-56 224.2 230 47.0
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 2.5e-56 223.4 273 41.4
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 2.5e-56 223.4 229 45.9
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.5e-56 223.4 234 44.0
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 4.3e-56 222.6 296 41.2
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 5.6e-56 222.2 266 43.2
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.6e-55 220.7 317 38.5
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.8e-55 219.9 234 44.9
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 8.1e-55 218.4 293 39.2
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.1e-54 218.0 230 47.0
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.4e-54 217.6 281 42.0
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.4e-54 217.6 230 46.1
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 5.3e-54 215.7 247 42.5
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 9.0e-54 214.9 230 45.7
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 9.0e-54 214.9 277 40.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 6.4e-52 208.8 265 40.0
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.4e-51 207.6 289 41.2
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.6e-50 204.1 241 44.0
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.1e-48 198.0 256 40.6
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.3e-47 194.5 201 42.8
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.8e-47 193.4 223 39.9
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.1e-46 191.4 212 45.3
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 3.1e-46 189.9 212 45.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.5e-45 187.6 255 40.8
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 2.0e-45 187.2 256 38.3
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 5.8e-45 185.7 264 35.6
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 5.8e-45 185.7 252 36.5
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 7.6e-45 185.3 253 36.8
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 9.9e-45 184.9 190 46.3
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.7e-44 184.1 263 37.3
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.7e-44 184.1 308 35.7
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.9e-44 183.3 190 46.3
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 4.9e-44 182.6 241 39.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.4e-43 180.3 229 39.7
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-43 179.1 175 46.9
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 7.1e-43 178.7 189 46.0
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-42 177.6 212 42.5
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.6e-42 177.6 212 42.5
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.6e-42 177.6 212 42.5
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 2.7e-42 176.8 189 45.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.0e-41 173.3 237 38.8
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.4e-36 155.2 203 36.9
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.9e-34 148.7 175 40.6
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.3e-33 147.1 235 36.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.5e-32 143.7 204 37.3
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 2.4e-30 137.1 182 40.1
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 4.1e-30 136.3 176 40.3
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-30 136.0 173 41.6
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-29 133.7 222 35.1
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 5.8e-29 132.5 176 40.9
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 5.8e-29 132.5 226 34.5
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 7.6e-29 132.1 193 40.9
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 6.5e-28 129.0 203 34.0
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 9.3e-27 125.2 256 32.4
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 6.1e-26 122.5 256 32.4
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-25 121.7 140 42.1
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.1e-25 119.4 114 47.4
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.5e-24 117.1 158 37.3
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 3.3e-24 116.7 139 41.7
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 9.7e-24 115.2 258 32.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 1.3e-23 114.8 174 34.5
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.8e-23 113.6 193 34.7
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 6.9e-22 109.0 129 42.6
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 7.7e-21 105.5 191 36.1
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 6.5e-20 102.4 199 34.7
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.0e-17 95.1 176 34.1
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.0e-17 95.1 176 34.1
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 8.5e-12 75.5 72 47.2
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.2e-10 71.6 77 40.3
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 2.1e-10 70.9 154 33.8
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 5.1e-09 66.2 69 44.9
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 5.1e-09 66.2 69 44.9


User provided reference genes

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