Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 9.5e-231 803.1 400 100.0
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 1.9e-85 320.5 255 61.6
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.2e-85 319.7 304 54.6
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.2e-85 319.7 304 54.6
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 2.7e-84 316.6 298 55.4
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 7.9e-84 315.1 255 58.8
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 1.3e-83 314.3 304 53.9
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 1.3e-83 314.3 282 54.6
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 2.3e-83 313.5 272 58.1
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 8.7e-83 311.6 304 53.6
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 8.7e-83 311.6 258 59.7
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.1e-82 311.2 265 57.0
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 1.1e-82 311.2 255 60.0
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 2.5e-82 310.1 252 60.3
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 2.5e-82 310.1 252 60.3
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 2.5e-82 310.1 252 60.3
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 2.5e-82 310.1 258 59.3
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 4.3e-82 309.3 266 57.9
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 5.6e-82 308.9 252 60.3
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 7.4e-82 308.5 257 58.4
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 9.6e-82 308.1 255 60.4
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 1.3e-81 307.8 288 54.9
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 1.6e-81 307.4 330 50.3
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 1.6e-81 307.4 255 59.6
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 1.6e-81 307.4 269 56.5
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 2.8e-81 306.6 306 51.6
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 3.6e-81 306.2 252 59.9
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 3.6e-81 306.2 275 54.9
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 6.2e-81 305.4 267 58.4
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 8.1e-81 305.1 255 60.8
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 8.1e-81 305.1 255 59.6
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 8.1e-81 305.1 255 59.6
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 8.1e-81 305.1 275 56.0
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 1.1e-80 304.7 274 55.8
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 1.4e-80 304.3 255 58.8
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 1.4e-80 304.3 288 54.5
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 1.8e-80 303.9 256 59.4
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.8e-80 303.9 256 57.4
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 2.4e-80 303.5 255 56.9
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 3.1e-80 303.1 302 52.3
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 3.1e-80 303.1 306 51.3
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 3.1e-80 303.1 252 59.9
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 3.1e-80 303.1 271 56.1
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 4.0e-80 302.8 288 52.8
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 5.3e-80 302.4 258 57.8
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 9.0e-80 301.6 260 57.3
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 9.0e-80 301.6 276 53.3
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 9.0e-80 301.6 276 53.3
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 9.0e-80 301.6 266 55.6
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 1.2e-79 301.2 296 51.7
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 1.5e-79 300.8 325 48.9
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.5e-79 300.8 271 55.0
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 2.6e-79 300.1 258 57.8
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 3.4e-79 299.7 270 55.9
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 3.4e-79 299.7 316 48.4
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 4.5e-79 299.3 258 57.8
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 4.5e-79 299.3 254 58.7
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 7.6e-79 298.5 255 57.6
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 9.9e-79 298.1 297 50.5
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 9.9e-79 298.1 258 54.7
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 1.3e-78 297.7 255 56.1
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 1.7e-78 297.4 257 59.1
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 2.2e-78 297.0 277 53.1
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.9e-78 296.6 254 58.3
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 3.8e-78 296.2 259 54.4
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 1.1e-77 294.7 288 53.1
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 1.9e-77 293.9 325 48.6
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 1.6e-76 290.8 335 48.7
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 2.1e-76 290.4 258 53.9
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 3.5e-76 289.7 259 59.5
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 4.6e-76 289.3 257 56.0
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 7.9e-76 288.5 295 47.5
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 1.8e-75 287.3 299 49.2
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 1.1e-74 284.6 311 48.6
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 4.3e-74 282.7 234 59.0
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 1.3e-73 281.2 254 54.7
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 1.6e-73 280.8 237 57.4
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 3.7e-73 279.6 310 46.8
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 4.8e-73 279.3 403 40.9
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 2.0e-71 273.9 233 60.1
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 2.6e-71 273.5 230 57.4
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 2.6e-71 273.5 308 46.1
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 8.4e-70 268.5 299 48.5
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 8.4e-70 268.5 235 57.0
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 8.4e-70 268.5 235 57.0
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 8.4e-70 268.5 350 43.7
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 2.1e-65 253.8 274 50.0
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 1.4e-64 251.1 238 56.7
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 1.7e-62 244.2 303 44.2
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 1.4e-61 241.1 231 53.2
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 7.2e-61 238.8 210 56.2
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 7.2e-61 238.8 265 47.5
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.3e-57 228.0 202 55.4
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 1.6e-57 227.6 354 41.5
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 1.1e-56 224.9 188 56.9
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.8e-56 224.2 185 58.9
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 2.9e-54 216.9 189 57.1
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 2.3e-51 207.2 172 58.1
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 2.8e-49 200.3 256 42.2
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 3.7e-49 199.9 172 55.2
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 2.0e-47 194.1 186 50.0
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 4.1e-40 169.9 257 38.1
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 3.5e-39 166.8 191 45.5
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.9e-37 161.0 264 34.5
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.9e-37 161.0 264 34.5
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 5.2e-35 152.9 115 62.6
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 3.7e-33 146.7 188 46.3
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 4.1e-32 143.3 137 52.6
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.3e-30 138.3 137 51.1
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 1.6e-28 131.3 256 35.9
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 3.0e-27 127.1 183 43.2
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 1.2e-26 125.2 286 32.9
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.7e-25 120.2 137 46.7
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 3.8e-22 110.2 273 31.1
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 3.5e-15 87.0 97 43.3
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.8e-14 83.6 71 50.7
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 6.1e-12 76.3 50 66.0


User provided reference genes

Program Settings