Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 1.3e-146 523.1 269 100.0
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 6.1e-72 275.0 200 68.5
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 1.9e-70 270.0 241 57.7
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 4.8e-69 265.4 256 54.3
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 6.7e-63 245.0 216 52.8
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 4.4e-62 242.3 237 50.6
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 5.7e-62 241.9 216 51.9
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 7.4e-62 241.5 222 51.8
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 1.3e-61 240.7 222 51.8
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 1.7e-61 240.4 204 56.4
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 3.7e-61 239.2 183 61.7
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 4.8e-61 238.8 204 55.9
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 6.3e-61 238.4 222 51.4
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.1e-60 237.7 233 51.5
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.4e-60 237.3 229 52.0
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.4e-60 237.3 221 50.7
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 1.4e-60 237.3 218 55.5
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 3.1e-60 236.1 238 49.6
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 3.1e-60 236.1 237 51.1
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 4.1e-60 235.7 243 50.2
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 5.3e-60 235.3 215 55.8
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 5.3e-60 235.3 215 55.8
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 6.9e-60 235.0 215 55.3
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.5e-59 233.8 221 52.5
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.0e-59 233.4 242 49.2
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 2.6e-59 233.0 212 53.8
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 3.4e-59 232.6 204 55.4
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 3.4e-59 232.6 228 52.6
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 4.5e-59 232.3 242 50.8
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 4.5e-59 232.3 224 52.2
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 4.5e-59 232.3 211 52.6
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 7.7e-59 231.5 241 51.0
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.7e-58 230.3 267 44.6
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 2.2e-58 229.9 230 50.0
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 2.2e-58 229.9 220 52.7
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.8e-58 229.2 219 52.5
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.8e-58 229.2 219 52.5
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 3.8e-58 229.2 205 55.6
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 5.0e-58 228.8 234 48.7
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 6.5e-58 228.4 214 53.7
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 8.5e-58 228.0 242 50.0
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 8.5e-58 228.0 218 52.3
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 8.5e-58 228.0 243 49.0
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.1e-57 227.6 210 52.4
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 1.1e-57 227.6 223 50.7
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.4e-57 227.3 233 47.2
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 1.9e-57 226.9 229 50.2
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 1.9e-57 226.9 210 55.2
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 2.5e-57 226.5 227 50.2
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 2.5e-57 226.5 198 54.5
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 3.2e-57 226.1 228 51.8
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 4.2e-57 225.7 222 50.5
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 7.2e-57 224.9 200 55.0
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.2e-56 224.2 241 50.2
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.6e-56 223.8 226 51.3
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 2.7e-56 223.0 219 50.2
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 2.7e-56 223.0 224 50.0
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 3.6e-56 222.6 201 54.2
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 3.6e-56 222.6 219 50.7
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 3.6e-56 222.6 219 50.7
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 4.7e-56 222.2 267 44.6
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 4.7e-56 222.2 234 49.1
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 6.1e-56 221.9 214 50.9
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 6.1e-56 221.9 202 52.0
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 6.1e-56 221.9 201 52.7
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 7.9e-56 221.5 237 50.2
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 7.9e-56 221.5 226 50.9
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 7.9e-56 221.5 199 51.8
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 1.0e-55 221.1 212 52.4
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 1.8e-55 220.3 231 50.6
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 1.8e-55 220.3 175 62.3
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.8e-55 220.3 223 52.9
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 2.3e-55 219.9 234 50.0
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 2.3e-55 219.9 239 48.1
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 3.0e-55 219.5 222 52.7
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 3.0e-55 219.5 205 53.2
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 5.2e-55 218.8 223 52.5
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 6.7e-55 218.4 241 49.0
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 6.7e-55 218.4 201 53.2
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 6.7e-55 218.4 252 44.8
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 6.7e-55 218.4 269 46.5
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 8.8e-55 218.0 201 53.2
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.1e-54 217.6 222 50.0
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.1e-54 217.6 220 50.9
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 1.1e-54 217.6 222 52.7
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.1e-54 217.6 213 53.5
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.1e-54 217.6 212 51.9
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 1.5e-54 217.2 198 53.5
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 2.6e-54 216.5 222 50.5
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 2.6e-54 216.5 198 53.5
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 3.3e-54 216.1 206 51.9
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 7.4e-54 214.9 226 44.7
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 2.2e-53 213.4 223 50.2
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 2.2e-53 213.4 203 51.2
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 2.8e-53 213.0 225 48.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 8.2e-53 211.5 204 48.5
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.8e-52 210.3 242 47.9
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 7.0e-52 208.4 242 44.2
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.2e-51 207.6 184 57.1
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 4.4e-46 189.1 277 39.0
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.8e-39 167.2 204 47.1
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 2.4e-36 156.8 350 30.6
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 4.4e-30 136.0 145 47.6
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 5.7e-30 135.6 112 56.2
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 7.5e-30 135.2 222 35.1
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 4.3e-25 119.4 98 55.1
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 6.8e-23 112.1 92 57.6
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 2.6e-22 110.2 124 42.7
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 4.9e-21 105.9 147 43.5
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 3.9e-10 69.7 168 29.8
RcHm_v2.0_Chr6g0251261 Rosa chinensis HOM05D005243 ORTHO05D006670 4.3e-09 66.2 232 30.2
Solyc06g064570.3 Solanum lycopersicum HOM05D005243 ORTHO05D006670 9.5e-09 65.1 232 30.2
Sopen06g023050 Solanum pennellii HOM05D005243 ORTHO05D006670 9.5e-09 65.1 232 30.2
PGSC0003DMG400033127 Solanum tuberosum HOM05D005243 ORTHO05D006670 3.6e-08 63.2 232 29.7
Sed0009328 Sechium edule HOM05D005243 ORTHO05D006670 4.7e-08 62.8 186 31.2
Hund16915 Selenicereus undatus HOM05D005243 ORTHO05D006670 6.2e-08 62.4 233 28.8
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 8.1e-08 62.0 86 43.0
HanXRQChr09g0267031 Helianthus annuus HOM05D005243 ORTHO05D006670 1.8e-07 60.8 223 27.8
PSO017G4652 Papaver somniferum HOM05D005243 ORTHO05D006670 1.8e-07 60.8 231 28.6
PSO170G2000 Papaver somniferum HOM05D005243 ORTHO05D006670 1.8e-07 60.8 231 28.6
MSTRG.1596 Avicennia marina HOM05D005243 ORTHO05D006670 2.3e-07 60.5 189 30.7
Lalb_Chr01g0000051 Lupinus albus HOM05D005243 ORTHO05D006670 2.3e-07 60.5 231 26.8
GSVIVG01036301001 Vitis vinifera HOM05D005243 ORTHO05D006670 2.3e-07 60.5 229 28.4
BcaC06g34999 Brassica carinata HOM05D005243 ORTHO05D006670 4.0e-07 59.7 229 27.9
FAN15G1820 Fragaria x ananassa HOM05D005243 ORTHO05D006670 4.0e-07 59.7 232 29.3
FAN20G0760 Fragaria x ananassa HOM05D005243 ORTHO05D006670 4.0e-07 59.7 232 29.3
Hma1.2p1_0016F.1_g010690 Hydrangea macrophylla HOM05D005243 ORTHO05D006670 4.0e-07 59.7 186 30.1
SGA_v2.0_scaffold118G32611 Striga asiatica HOM05D005243 ORTHO05D006670 4.0e-07 59.7 186 30.6
Potri.019G071900 Populus trichocarpa HOM05D005243 ORTHO05D006670 5.2e-07 59.3 189 30.2
vmacro00940 Vaccinium macrocarpon HOM05D005243 ORTHO05D006670 5.2e-07 59.3 189 30.7
Peaxi162Scf00078g00625 Petunia axillaris HOM05D005243 ORTHO05D006670 6.8e-07 58.9 189 30.7
Cfa008079 Carpinus fangiana HOM05D005243 ORTHO05D006670 8.9e-07 58.5 186 30.1
CDE04G2106 Ceratophyllum demersum HOM05D005243 ORTHO05D006670 8.9e-07 58.5 232 28.4
Dinv22107 Davidia involucrata HOM05D005243 ORTHO05D006670 8.9e-07 58.5 231 28.1
Thhalv10008173m.g Eutrema salsugineum HOM05D005243 ORTHO05D006670 8.9e-07 58.5 229 27.9
FAN24G1286 Fragaria x ananassa HOM05D005243 ORTHO05D006670 8.9e-07 58.5 232 29.3
FAN27G0682 Fragaria x ananassa HOM05D005243 ORTHO05D006670 8.9e-07 58.5 232 29.3
Lsat_1_v5_gn_4_135781 Lactuca sativa HOM05D005243 ORTHO05D006670 8.9e-07 58.5 223 27.4
Prupe.8G007400 Prunus persica HOM05D005243 ORTHO05D006670 8.9e-07 58.5 228 28.1
QL09p001863 Quercus lobata HOM05D005243 ORTHO05D006670 8.9e-07 58.5 229 28.8
FvH4_2g00910 Fragaria vesca HOM05D005243 ORTHO05D006670 1.2e-06 58.2 223 28.7
Nitab4.5_0000213g0140 Nicotiana tabacum HOM05D005243 ORTHO05D006670 1.2e-06 58.2 189 30.7
Potri.008G202600 Populus trichocarpa HOM05D001530 ORTHO05D003676 1.2e-06 58.2 218 26.6
QL11p001747 Quercus lobata HOM05D005243 ORTHO05D006670 1.2e-06 58.2 229 28.4
MD10G1004900 Malus domestica HOM05D005243 ORTHO05D006670 1.5e-06 57.8 228 27.6
Nitab4.5_0002654g0010 Nicotiana tabacum HOM05D005243 ORTHO05D006670 1.5e-06 57.8 194 29.4
CAN.G14.57 Capsicum annuum HOM05D005243 ORTHO05D006670 2.0e-06 57.4 233 30.0
Ciclev10021088m.g Citrus clementina HOM05D005243 ORTHO05D006670 2.0e-06 57.4 189 29.6
Nitab4.5_0003723g0010 Nicotiana tabacum HOM05D005243 ORTHO05D006670 2.0e-06 57.4 189 30.2
Carub.0001s2235 Capsella rubella HOM05D005243 ORTHO05D006670 2.6e-06 57.0 229 27.5
Mapoly0066s0111 Marchantia polymorpha HOM05D005243 ORTHO05D006670 2.6e-06 57.0 186 30.6
MELO3C022172.2 Cucumis melo HOM05D005243 ORTHO05D006670 3.4e-06 56.6 186 29.6
CsaV3_5G039920 Cucumis sativus L. HOM05D005243 ORTHO05D006670 3.4e-06 56.6 186 29.6
EL10Ac1g01265 Beta vulgaris HOM05D005243 ORTHO05D006670 4.4e-06 56.2 220 26.8
Nitab4.5_0003510g0060 Nicotiana tabacum HOM05D005243 ORTHO05D006670 4.4e-06 56.2 223 27.4
Sabra08G0158900 Salix brachista HOM05D001530 ORTHO05D003676 4.4e-06 56.2 208 26.4
Atru.chr13.2491 Acer truncatum HOM05D005243 ORTHO05D006670 5.8e-06 55.8 228 27.6
Atru.chr13.2503 Acer truncatum HOM05D005243 ORTHO05D006670 5.8e-06 55.8 228 27.6
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 5.8e-06 55.8 220 27.3
Gohir.A13G115700 Gossypium hirsutum HOM05D005243 ORTHO05D006670 5.8e-06 55.8 228 28.1
HPP92_001198 Vanilla planifolia HOM05D005243 ORTHO05D006670 5.8e-06 55.8 186 29.6
Zm00001eb145530 Zea mays HOM05D005243 ORTHO05D006670 5.8e-06 55.8 173 31.8
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 7.5e-06 55.5 182 26.4
BcaB03g14182 Brassica carinata HOM05D005243 ORTHO05D006670 9.9e-06 55.1 229 26.6


User provided reference genes

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