Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0073s0024 Marchantia polymorpha HOM05D002959 ORTHO05D003237 2.8e-94 348.6 174 100.0
SMO117G0293 Selaginella moellendorffii HOM05D002959 ORTHO05D003237 3.7e-38 162.2 149 51.0
Pp3c12_4320 Physcomitrium patens HOM05D002959 ORTHO05D003237 8.5e-35 151.0 149 47.7
AagrBONN_evm.TU.Sc2ySwM_228.470 Anthoceros agrestis HOM05D002959 ORTHO05D003237 1.5e-34 150.2 152 48.7
Cre01.g050000 Chlamydomonas reinhardtii HOM05D002959 ORTHO05D003237 8.3e-30 134.4 149 44.3
MCO15G630 Micromonas commoda HOM05D002959 ORTHO05D003237 3.4e-23 112.5 163 38.0
TAR626G1024 Trochodendron aralioides HOM05D002959 ORTHO05D003237 2.8e-17 92.8 142 38.7
Nn1g03594 Nelumbo nucifera HOM05D002959 ORTHO05D003237 4.7e-17 92.0 136 34.6
Lj1A760T25 Lonicera japonica HOM05D002959 ORTHO05D003237 6.1e-17 91.7 156 35.3
Aa31LG5G4670 Aethionema arabicum HOM05D002959 ORTHO05D003237 8.0e-17 91.3 155 34.8
Actinidia09710 Actinidia chinensis HOM05D002959 ORTHO05D003237 1.0e-16 90.9 155 36.1
Lj1A759T41 Lonicera japonica HOM05D002959 ORTHO05D003237 1.4e-16 90.5 156 34.6
MD17G1095500 Malus domestica HOM05D002959 ORTHO05D003237 1.4e-16 90.5 150 34.7
Sabra09G0090200 Salix brachista HOM05D002959 ORTHO05D003237 1.8e-16 90.1 136 36.8
Hma1.2p1_0948F.1_g240420 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 2.3e-16 89.7 142 35.9
Hma1.2p1_1768F.1_g301525 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 2.3e-16 89.7 142 35.9
Sopen07g026060 Solanum pennellii HOM05D002959 ORTHO05D003237 2.3e-16 89.7 142 33.8
Ca_26237_v3 Cicer arietinum L. HOM05D002959 ORTHO05D003237 3.0e-16 89.4 154 32.5
Potri.009G117800 Populus trichocarpa HOM05D002959 ORTHO05D003237 4.0e-16 89.0 136 37.5
PGSC0003DMG400025497 Solanum tuberosum HOM05D002959 ORTHO05D003237 5.2e-16 88.6 142 35.2
Peaxi162Scf00007g00929 Petunia axillaris HOM05D002959 ORTHO05D003237 6.8e-16 88.2 142 35.2
RcHm_v2.0_Chr2g0159721 Rosa chinensis HOM05D002959 ORTHO05D003237 6.8e-16 88.2 136 35.3
TAR626G0389 Trochodendron aralioides HOM05D002959 ORTHO05D003237 6.8e-16 88.2 142 35.9
Aa31LG1G19530 Aethionema arabicum HOM05D002959 ORTHO05D003237 8.9e-16 87.8 136 34.6
Aqoxy1G03306 Aquilegia oxysepala HOM05D002959 ORTHO05D003237 8.9e-16 87.8 142 35.2
MSTRG.6556 Avicennia marina HOM05D002959 ORTHO05D003237 8.9e-16 87.8 136 36.8
FAN09G0349 Fragaria x ananassa HOM05D002959 ORTHO05D003237 8.9e-16 87.8 136 34.6
MD17G1095300 Malus domestica HOM05D002959 ORTHO05D003237 8.9e-16 87.8 150 35.3
Oeu041931.2 Olea europaea HOM05D002959 ORTHO05D003237 8.9e-16 87.8 136 36.0
ATR0752G073 Amborella trichopoda HOM05D002959 ORTHO05D003237 1.2e-15 87.4 138 34.1
Solyc07g052430.3 Solanum lycopersicum HOM05D002959 ORTHO05D003237 1.2e-15 87.4 142 33.1
AL4G27760 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 1.5e-15 87.0 155 35.5
Prupe.3G218400 Prunus persica HOM05D002959 ORTHO05D003237 1.5e-15 87.0 153 34.6
TPR.G4665 Trifolium pratense HOM05D002959 ORTHO05D003237 1.5e-15 87.0 145 30.3
Psat7g158640 Pisum sativum HOM05D002959 ORTHO05D003237 2.0e-15 86.7 154 31.8
HPP92_010103 Vanilla planifolia HOM05D002959 ORTHO05D003237 2.0e-15 86.7 155 32.3
AUR62025051 Chenopodium quinoa HOM05D002959 ORTHO05D003237 2.6e-15 86.3 158 33.5
Migut.M00412 Erythranthe guttata HOM05D002959 ORTHO05D003237 2.6e-15 86.3 136 34.6
Eucgr.A01714 Eucalyptus grandis HOM05D002959 ORTHO05D003237 2.6e-15 86.3 156 35.9
unitig_699.g19615 Utricularia gibba HOM05D000109 ORTHO05D003237 2.6e-15 86.3 140 35.7
FvH4_6g43380 Fragaria vesca HOM05D002959 ORTHO05D003237 3.4e-15 85.9 136 33.8
FAN05G3149 Fragaria x ananassa HOM05D002959 ORTHO05D003237 3.4e-15 85.9 136 33.8
Medtr4g047630 Medicago truncatula HOM05D002959 ORTHO05D003237 3.4e-15 85.9 136 33.1
AT2G32380 Arabidopsis thaliana HOM05D002959 ORTHO05D003237 4.4e-15 85.5 155 34.8
CSS0022033 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 4.4e-15 85.5 143 37.8
CSS0025283 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 4.4e-15 85.5 143 36.4
CAN.G846.2 Capsicum annuum HOM05D002959 ORTHO05D003237 4.4e-15 85.5 142 33.1
Cfa014417 Carpinus fangiana HOM05D002959 ORTHO05D003237 4.4e-15 85.5 141 36.2
CDE02G3691 Ceratophyllum demersum HOM05D002959 ORTHO05D003237 4.4e-15 85.5 140 35.0
ClCG02G001850 Citrullus lanatus HOM05D002959 ORTHO05D003237 4.4e-15 85.5 155 34.8
FAN14G2056 Fragaria x ananassa HOM05D002959 ORTHO05D003237 4.4e-15 85.5 136 33.8
Manes.12G075500 Manihot esculenta HOM05D002959 ORTHO05D003237 4.4e-15 85.5 142 33.1
Dinv39701 Davidia involucrata HOM05D002959 ORTHO05D003237 5.8e-15 85.1 156 32.7
HanXRQChr15g0496411 Helianthus annuus HOM05D002959 ORTHO05D003237 5.8e-15 85.1 156 32.7
AUR62037134 Chenopodium quinoa HOM05D002959 ORTHO05D003237 7.5e-15 84.7 142 33.8
FAN02G0167 Fragaria x ananassa HOM05D002959 ORTHO05D003237 7.5e-15 84.7 136 33.1
CAN.G846.3 Capsicum annuum HOM05D002959 ORTHO05D003237 9.8e-15 84.3 142 33.8
Haze_12877 Corylus avellana HOM05D002959 ORTHO05D003237 9.8e-15 84.3 141 35.5
Os07g0458700 Oryza sativa ssp. japonica HOM05D002959 ORTHO05D003237 9.8e-15 84.3 126 36.5
QL08p033321 Quercus lobata HOM05D002959 ORTHO05D003237 9.8e-15 84.3 142 35.2
SalBow7G4760 Salvia bowleyana HOM05D002959 ORTHO05D003237 9.8e-15 84.3 123 34.1
CSS0034965 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 1.3e-14 84.0 143 37.1
MD17G1095600 Malus domestica HOM05D002959 ORTHO05D003237 1.3e-14 84.0 155 34.8
Manes.13G070900 Manihot esculenta HOM05D002959 ORTHO05D003237 1.3e-14 84.0 142 34.5
TPR.G23666 Trifolium pratense HOM05D002959 ORTHO05D003237 1.3e-14 84.0 136 30.9
CSS0045723 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 1.7e-14 83.6 143 37.1
MELO3C018810.2 Cucumis melo HOM05D002959 ORTHO05D003237 1.7e-14 83.6 146 35.6
CsaV3_7G003690 Cucumis sativus L. HOM05D002959 ORTHO05D003237 1.7e-14 83.6 146 35.6
ECA233G6126 Erigeron canadensis HOM05D002959 ORTHO05D003237 1.7e-14 83.6 141 34.8
MELO3C017552.2 Cucumis melo HOM05D002959 ORTHO05D003237 2.2e-14 83.2 133 36.8
Lj3g0006213 Lotus japonicus HOM05D002959 ORTHO05D003237 2.2e-14 83.2 136 30.9
MD09G1107600 Malus domestica HOM05D002959 ORTHO05D003237 2.2e-14 83.2 145 34.5
CAN.G846.4 Capsicum annuum HOM05D002959 ORTHO05D003237 2.9e-14 82.8 142 33.8
CiPaw.03G161200 Carya illinoinensis HOM05D002959 ORTHO05D003237 2.9e-14 82.8 142 35.2
PSO541G0978 Papaver somniferum HOM05D002959 ORTHO05D003237 2.9e-14 82.8 139 34.5
Prupe.3G218100 Prunus persica HOM05D002959 ORTHO05D003237 2.9e-14 82.8 159 32.7
Solyc07g052440.3 Solanum lycopersicum HOM05D002959 ORTHO05D003237 2.9e-14 82.8 142 31.7
CANSAT64G1461 Cannabis sativa HOM05D002959 ORTHO05D003237 3.7e-14 82.4 149 32.2
Ciclev10016979m.g Citrus clementina HOM05D002959 ORTHO05D003237 3.7e-14 82.4 136 31.6
DCAR_012948 Daucus carota HOM05D002959 ORTHO05D003237 3.7e-14 82.4 142 33.8
Lsat_1_v5_gn_8_128621 Lactuca sativa HOM05D002959 ORTHO05D003237 3.7e-14 82.4 159 30.8
PGSC0003DMG400025496 Solanum tuberosum HOM05D002959 ORTHO05D003237 3.7e-14 82.4 142 31.7
BcaC07g36857 Brassica carinata HOM05D002959 ORTHO05D003237 4.9e-14 82.0 136 33.1
ECA233G1396 Erigeron canadensis HOM05D002959 ORTHO05D003237 4.9e-14 82.0 136 31.6
Thhalv10008934m.g Eutrema salsugineum HOM05D002959 ORTHO05D003237 4.9e-14 82.0 138 34.1
Lalb_Chr03g0028761 Lupinus albus HOM05D002959 ORTHO05D003237 4.9e-14 82.0 136 33.1
C08p01810 Brassica napus HOM05D002959 ORTHO05D003237 6.4e-14 81.6 136 32.4
BolC8t46981H Brassica oleracea HOM05D002959 ORTHO05D003237 6.4e-14 81.6 136 32.4
Cpa.g.sc4.170 Carica papaya HOM05D002959 ORTHO05D003237 6.4e-14 81.6 154 31.8
Glyma.12G099900 Glycine max HOM05D002959 ORTHO05D003237 6.4e-14 81.6 136 33.8
Sopen07g026070 Solanum pennellii HOM05D002959 ORTHO05D003237 6.4e-14 81.6 142 31.7
AL4G27750 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 8.3e-14 81.3 136 30.9
Phvul.011G104500 Phaseolus vulgaris HOM05D002959 ORTHO05D003237 8.3e-14 81.3 136 32.4
Cc05_g04870 Coffea canephora HOM05D002959 ORTHO05D003237 1.1e-13 80.9 156 33.3
Prupe.3G218200 Prunus persica HOM05D002959 ORTHO05D003237 1.1e-13 80.9 155 34.2
BraA08t35554Z Brassica rapa HOM05D002959 ORTHO05D003237 1.4e-13 80.5 136 32.4
CARHR126200 Cardamine hirsuta HOM05D002959 ORTHO05D003237 1.4e-13 80.5 136 33.1
arahy.Tifrunner.gnm1.ann1.X4J0KT Arachis hypogaea HOM05D002959 ORTHO05D003237 1.8e-13 80.1 136 32.4
A08p36530 Brassica napus HOM05D002959 ORTHO05D003237 3.2e-13 79.3 136 31.6
BolC5t29124H Brassica oleracea HOM05D002959 ORTHO05D003237 3.2e-13 79.3 136 34.6
Glyma.06G303800 Glycine max HOM05D002959 ORTHO05D003237 3.2e-13 79.3 136 33.1
MD09G1107500 Malus domestica HOM05D002959 ORTHO05D003237 3.2e-13 79.3 154 32.5
Nitab4.5_0002137g0130 Nicotiana tabacum HOM05D002959 ORTHO05D003237 3.2e-13 79.3 142 31.0
RcHm_v2.0_Chr2g0159661 Rosa chinensis HOM05D002959 ORTHO05D003237 3.2e-13 79.3 160 32.5
Zm00001eb305670 Zea mays HOM05D002959 ORTHO05D003237 3.2e-13 79.3 137 34.3
Atru.chr6.3170 Acer truncatum HOM05D002959 ORTHO05D003237 4.1e-13 79.0 154 30.5
arahy.Tifrunner.gnm1.ann1.18208U Arachis hypogaea HOM05D002959 ORTHO05D003237 4.1e-13 79.0 136 31.6
A10p03750 Brassica napus HOM05D002959 ORTHO05D003237 4.1e-13 79.0 136 33.8
C05p03450 Brassica napus HOM05D002959 ORTHO05D003237 4.1e-13 79.0 136 34.6
BraA10t42648Z Brassica rapa HOM05D002959 ORTHO05D003237 4.1e-13 79.0 136 33.8
Sp1g04070 Schrenkiella parvula HOM05D002959 ORTHO05D003237 4.1e-13 79.0 135 33.3
SpUn0024_0070 Schrenkiella parvula HOM05D002959 ORTHO05D003237 4.1e-13 79.0 135 33.3
AT1G05210 Arabidopsis thaliana HOM05D002959 ORTHO05D003237 5.4e-13 78.6 140 33.6
CSS0001025 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 7.0e-13 78.2 143 36.4
ClCG07G009050 Citrullus lanatus HOM05D002959 ORTHO05D003237 7.0e-13 78.2 139 35.3
SMO356G0250 Selaginella moellendorffii HOM05D002959 ORTHO05D003237 7.0e-13 78.2 85 41.2
Sc21g0001590 Simmondsia chinensis HOM05D002959 ORTHO05D003237 7.0e-13 78.2 152 30.9
Os07g0458500 Oryza sativa ssp. japonica HOM05D002959 ORTHO05D003237 9.2e-13 77.8 119 34.5
CARHR004690 Cardamine hirsuta HOM05D002959 ORTHO05D003237 1.2e-12 77.4 136 33.8
Dinv05448 Davidia involucrata HOM05D002959 ORTHO05D003237 1.2e-12 77.4 142 31.7
MD17G1095800 Malus domestica HOM05D002959 ORTHO05D003237 1.6e-12 77.0 145 33.1
PSO210G7437 Papaver somniferum HOM05D002959 ORTHO05D003237 2.0e-12 76.6 135 28.9
PSO541G3942 Papaver somniferum HOM05D002959 ORTHO05D003237 2.0e-12 76.6 117 29.9
PSO675G5746 Papaver somniferum HOM05D002959 ORTHO05D003237 2.0e-12 76.6 131 29.0
VMungo1127G2165 Vigna mungo HOM05D002959 ORTHO05D003237 2.0e-12 76.6 136 31.6
FAN09G2165 Fragaria x ananassa HOM05D002959 ORTHO05D003237 2.7e-12 76.3 155 33.5
MBI18_g10792_MAGBIO Magnolia biondii HOM05D002959 ORTHO05D003237 2.7e-12 76.3 117 37.6
PGR042G1226 Punica granatum HOM05D002959 ORTHO05D003237 2.7e-12 76.3 141 31.2
AL1G14980 Arabidopsis lyrata HOM05D002959 ORTHO05D003237 3.5e-12 75.9 136 34.6
FvH4_6g43330 Fragaria vesca HOM05D002959 ORTHO05D003237 6.0e-12 75.1 160 31.9
FAN14G3479 Fragaria x ananassa HOM05D002959 ORTHO05D003237 6.0e-12 75.1 160 31.9
CSS0046576 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 1.0e-11 74.3 136 34.6
Sed0004815 Sechium edule HOM05D002959 ORTHO05D003237 1.0e-11 74.3 142 33.1
FAN05G2600 Fragaria x ananassa HOM05D002959 ORTHO05D003237 1.3e-11 73.9 149 32.9
Os03g0646400 Oryza sativa ssp. japonica HOM05D002959 ORTHO05D003237 1.7e-11 73.6 140 33.6
CANSAT64G0672 Cannabis sativa HOM05D002959 ORTHO05D003237 2.3e-11 73.2 142 32.4
TWI36G0391 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 2.3e-11 73.2 157 28.7
CSS0017236 Camellia sinensis var. sinensis HOM05D002959 ORTHO05D003237 3.0e-11 72.8 139 33.1
PSO478G4511 Papaver somniferum HOM05D002959 ORTHO05D003237 3.9e-11 72.4 165 28.5
Rhsim06G0160800 Rhododendron simsii HOM05D002959 ORTHO05D003237 3.9e-11 72.4 102 37.3
TWI36G0789 Tripterygium wilfordii HOM05D002959 ORTHO05D003237 3.9e-11 72.4 157 30.6
HanXRQChr15g0496401 Helianthus annuus HOM05D002959 ORTHO05D003237 5.0e-11 72.0 142 30.3
Hma1.2p1_1768F.1_g301560 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 5.0e-11 72.0 160 30.0
Nitab4.5_0009026g0020 Nicotiana tabacum HOM05D002959 ORTHO05D003237 5.0e-11 72.0 140 28.6
PSO210G0061 Papaver somniferum HOM05D002959 ORTHO05D003237 8.6e-11 71.2 135 25.2
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.1e-10 70.9 133 36.1
THA.LOC104800984 Tarenaya hassleriana HOM05D002959 ORTHO05D003237 1.9e-10 70.1 154 30.5
Sp4g14750 Schrenkiella parvula HOM05D002959 ORTHO05D003237 2.5e-10 69.7 136 32.4
ECA233G3122 Erigeron canadensis HOM05D000906 ORTHO05D000713 3.3e-10 69.3 149 26.8
SMO111G0152 Selaginella moellendorffii HOM05D002959 ORTHO05D003237 3.3e-10 69.3 82 41.5
Cc05_g04860 Coffea canephora HOM05D002959 ORTHO05D003237 5.6e-10 68.6 142 31.0
MD17G1095200 Malus domestica HOM05D002959 ORTHO05D003237 7.3e-10 68.2 141 30.5
PSO675G5378 Papaver somniferum HOM05D002959 ORTHO05D003237 1.2e-09 67.4 102 32.4
Duzib251G0261 Durio zibethinus HOM05D002959 ORTHO05D003237 1.6e-09 67.0 136 25.7
Hma1.2p1_1768F.1_g301550 Hydrangea macrophylla HOM05D002959 ORTHO05D003237 4.7e-09 65.5 107 30.8
MBI18_g10797_MAGBIO Magnolia biondii HOM05D002959 ORTHO05D003237 6.2e-09 65.1 144 29.2
Gohir.A12G156800 Gossypium hirsutum HOM05D002959 ORTHO05D003237 5.8e-07 58.5 148 27.0
Gohir.D12G159600 Gossypium hirsutum HOM05D002959 ORTHO05D003237 5.8e-07 58.5 148 27.0
Gorai.008G172900 Gossypium raimondii HOM05D002959 ORTHO05D003237 5.8e-07 58.5 148 27.0
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 3.7e-06 55.8 107 33.6
MBI18_g19839_MAGBIO Magnolia biondii HOM05D002959 ORTHO05D003237 8.3e-06 54.7 84 34.5


User provided reference genes

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