Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 1.5e-236 822.4 405 100.0
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.4e-104 384.0 418 49.0
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 3.1e-104 382.9 417 48.2
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 9.1e-96 354.8 403 47.1
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 7.7e-95 351.7 409 46.2
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 8.5e-94 348.2 403 47.4
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 9.4e-93 344.7 407 46.9
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 9.4e-93 344.7 399 46.1
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.6e-92 344.0 404 47.0
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 3.6e-92 342.8 394 47.2
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 6.1e-92 342.0 392 45.7
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 6.1e-92 342.0 394 47.2
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 1.0e-91 341.3 392 45.9
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.0e-91 339.7 408 46.1
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 8.8e-91 338.2 397 45.8
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.5e-90 337.4 392 45.7
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 2.0e-90 337.0 398 46.2
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 2.6e-90 336.7 398 46.5
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.6e-90 336.7 408 45.6
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 4.4e-90 335.9 399 46.1
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 7.4e-90 335.1 390 45.1
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 9.7e-90 334.7 397 44.3
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 9.7e-90 334.7 406 46.1
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.3e-89 334.3 395 45.8
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.7e-89 334.0 396 46.0
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.7e-89 334.0 396 46.0
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.7e-89 334.0 407 45.0
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.7e-89 334.0 392 46.4
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 2.2e-89 333.6 405 45.2
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 2.2e-89 333.6 395 45.6
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 2.2e-89 333.6 395 45.6
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 2.2e-89 333.6 394 45.2
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 2.8e-89 333.2 395 45.8
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 2.8e-89 333.2 392 44.6
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.7e-89 332.8 394 44.7
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 4.8e-89 332.4 389 46.0
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.8e-89 332.4 394 44.9
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.8e-89 332.4 394 44.4
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.8e-89 332.4 408 45.6
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 6.3e-89 332.0 395 45.8
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 6.3e-89 332.0 406 45.1
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 6.3e-89 332.0 395 45.6
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 8.2e-89 331.6 394 45.7
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 8.2e-89 331.6 405 45.2
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 8.2e-89 331.6 395 45.1
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.1e-88 331.3 400 44.5
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.1e-88 331.3 405 46.2
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.4e-88 330.9 393 45.3
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 1.4e-88 330.9 393 45.3
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.4e-88 330.9 394 45.2
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.4e-88 330.1 404 45.0
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 3.1e-88 329.7 400 45.8
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 4.1e-88 329.3 400 45.8
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 4.1e-88 329.3 404 46.0
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 5.3e-88 328.9 417 44.4
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.0e-88 328.6 395 45.3
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 9.1e-88 328.2 412 44.2
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.2e-87 327.8 398 45.2
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 2.0e-87 327.0 399 46.1
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 2.6e-87 326.6 401 44.6
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 3.4e-87 326.2 409 43.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 5.9e-87 325.5 397 44.6
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.0e-86 324.7 400 44.5
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.7e-86 323.9 395 44.6
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.7e-86 323.9 394 44.7
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.7e-86 323.9 408 45.6
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 2.2e-86 323.6 403 43.9
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 2.9e-86 323.2 398 44.0
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 2.9e-86 323.2 441 43.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.8e-86 322.8 396 44.4
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 3.8e-86 322.8 394 43.7
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.0e-86 322.4 400 45.0
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 6.5e-86 322.0 419 43.2
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.4e-85 320.9 395 44.3
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.9e-85 320.5 404 45.3
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 2.5e-85 320.1 406 44.6
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.2e-85 319.7 395 44.8
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 4.2e-85 319.3 404 45.5
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 5.5e-85 318.9 401 44.1
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 3.6e-84 316.2 401 45.4
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 6.1e-84 315.5 382 45.3
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 2.3e-83 313.5 401 43.6
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 5.2e-83 312.4 420 42.1
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.6e-82 310.1 357 47.1
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 9.7e-82 308.1 381 43.3
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.7e-81 307.4 400 43.2
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.2e-81 307.0 407 43.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 4.8e-81 305.8 390 42.6
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.8e-80 303.9 401 41.4
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.7e-78 297.4 391 42.2
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 2.9e-78 296.6 387 43.4
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.9e-77 293.9 407 41.0
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.7e-76 290.0 436 40.4
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.7e-76 290.0 436 40.4
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 3.6e-76 289.7 335 46.0
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 6.1e-76 288.9 498 36.7
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 6.7e-75 285.4 398 41.2
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 8.8e-75 285.0 385 42.1
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 3.3e-74 283.1 380 42.4
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 5.7e-74 282.3 393 41.5
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.7e-74 281.6 398 41.5
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 9.7e-74 281.6 342 45.0
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 3.7e-73 279.6 393 41.2
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.1e-72 278.1 386 40.9
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.8e-72 277.3 390 40.3
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.4e-72 276.9 332 45.5
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.1e-72 276.6 396 41.7
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 4.1e-72 276.2 383 41.0
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.1e-72 276.2 403 41.9
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 9.1e-72 275.0 390 40.5
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 2.7e-71 273.5 388 41.0
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.7e-71 273.5 393 40.7
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.0e-70 271.6 402 39.8
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.0e-70 271.6 382 40.8
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.0e-70 271.6 402 40.3
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.3e-70 271.2 383 41.0
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 3.8e-70 269.6 369 41.7
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 6.5e-70 268.9 370 41.1
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 8.5e-70 268.5 389 41.9
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.5e-69 266.9 392 40.3
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.2e-69 266.5 383 40.2
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.2e-69 266.5 383 40.2
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 2.7e-68 263.5 271 49.8
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.6e-68 263.1 384 38.8
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 1.8e-67 260.8 387 41.1
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.2e-66 258.1 386 39.1
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 5.7e-66 255.8 364 40.9
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 5.7e-66 255.8 364 40.9
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 7.5e-66 255.4 380 39.5
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.3e-65 254.6 364 40.7
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.7e-65 254.2 380 39.2
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 3.7e-65 253.1 380 39.5
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 7.0e-64 248.8 375 38.9
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 3.8e-62 243.0 365 39.7
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 6.6e-62 242.3 448 34.4
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 6.6e-62 242.3 311 39.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.9e-61 240.7 359 37.9
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.3e-61 240.0 342 39.8
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 1.3e-57 228.0 349 41.0
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.8e-57 226.9 266 45.9
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.0e-56 222.2 273 45.4
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.9e-55 219.2 274 44.5
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.3e-53 212.2 281 43.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.8e-51 207.6 239 46.0
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.8e-51 207.6 285 41.8
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 2.3e-51 207.2 398 35.7
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.8e-51 205.7 262 42.7
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 3.7e-49 199.9 238 44.1
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 7.0e-40 169.1 206 45.6
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 2.7e-39 167.2 332 32.2
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.5e-39 166.8 172 47.1
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 2.3e-38 164.1 291 34.0
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 4.3e-37 159.8 494 28.1
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 3.1e-27 127.1 370 29.5
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 1.6e-20 104.8 369 26.8
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 2.2e-17 94.4 108 38.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 2.9e-17 94.0 235 26.8
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 3.8e-17 93.6 235 28.1
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 3.0e-14 84.0 85 45.9
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 6.6e-14 82.8 71 60.6
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.8e-12 77.4 109 43.1
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.5e-10 71.6 222 24.3
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.0e-10 71.2 107 40.2
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.3e-09 68.6 114 38.6
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 2.2e-09 67.8 110 40.0
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 3.2e-08 63.9 111 37.8


User provided reference genes

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