Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 5.4e-198 694.1 348 100.0
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 5.1e-79 298.9 373 47.5
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 2.0e-75 287.0 343 46.4
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 2.6e-75 286.6 338 47.3
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 6.4e-74 282.0 339 47.8
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.1e-73 281.2 347 46.1
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 4.2e-73 279.3 340 46.2
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 7.1e-73 278.5 344 46.8
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 9.3e-73 278.1 339 46.6
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 1.2e-72 277.7 347 46.4
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 1.6e-72 277.3 342 44.2
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 2.7e-72 276.6 344 43.9
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 3.5e-72 276.2 342 45.6
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 4.6e-72 275.8 338 47.6
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 1.0e-71 274.6 340 44.4
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 1.3e-71 274.2 346 45.4
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.3e-71 274.2 343 46.1
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 3.0e-71 273.1 344 45.1
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 6.6e-71 271.9 343 43.7
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 8.7e-71 271.6 335 45.4
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.1e-70 271.2 341 45.5
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 1.9e-70 270.4 343 46.9
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.9e-70 270.4 348 45.7
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 4.3e-70 269.2 342 45.0
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 5.6e-70 268.9 337 45.1
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 1.6e-69 267.3 337 42.4
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 1.6e-69 267.3 337 42.4
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 2.1e-69 266.9 335 45.4
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 2.1e-69 266.9 356 44.4
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 2.8e-69 266.5 333 45.0
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.6e-69 266.2 333 44.4
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 4.8e-69 265.8 331 44.4
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 4.8e-69 265.8 338 44.1
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.1e-68 264.6 333 43.2
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.1e-68 264.6 341 42.5
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 1.8e-68 263.8 370 44.3
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 1.8e-68 263.8 344 42.4
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 2.4e-68 263.5 345 44.1
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 3.1e-68 263.1 336 42.6
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 4.0e-68 262.7 343 43.1
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 6.9e-68 261.9 337 43.3
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.2e-67 261.2 333 45.6
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 1.2e-67 261.2 338 45.3
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.5e-67 260.8 337 44.5
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 2.0e-67 260.4 335 45.1
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 2.6e-67 260.0 336 45.8
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 4.4e-67 259.2 335 43.6
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 7.6e-67 258.5 338 43.2
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 1.3e-66 257.7 334 44.6
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 1.7e-66 257.3 335 43.6
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 2.9e-66 256.5 340 45.6
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 2.9e-66 256.5 343 44.6
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 2.9e-66 256.5 334 45.5
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 2.9e-66 256.5 334 44.3
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 2.9e-66 256.5 344 41.6
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.9e-65 253.8 347 40.9
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 5.4e-65 252.3 331 45.6
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 7.1e-65 251.9 338 44.1
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 2.1e-64 250.4 335 43.9
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.7e-64 250.0 364 40.4
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.0e-63 248.1 335 43.0
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.7e-63 247.3 334 41.3
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.0e-63 246.5 333 42.6
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.0e-63 246.5 344 43.9
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 1.1e-62 244.6 374 41.4
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.9e-62 243.8 331 40.8
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 4.3e-62 242.7 382 38.2
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 9.6e-62 241.5 336 42.9
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 1.3e-61 241.1 341 44.0
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 1.3e-61 241.1 331 42.3
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.1e-61 240.4 334 43.4
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 2.1e-61 240.4 276 50.7
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 3.6e-61 239.6 347 43.8
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 3.6e-61 239.6 336 42.6
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 1.1e-60 238.0 337 43.3
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 1.1e-60 238.0 347 42.4
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 1.8e-60 237.3 330 43.0
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 2.4e-60 236.9 342 43.0
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 6.9e-60 235.3 330 43.0
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 9.0e-60 235.0 255 47.5
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 9.0e-60 235.0 323 40.2
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.0e-59 233.8 325 41.2
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 3.4e-59 233.0 365 42.5
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 5.8e-59 232.3 344 41.3
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 2.2e-58 230.3 330 40.9
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 2.4e-57 226.9 370 41.1
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 2.4e-57 226.9 354 40.1
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.4e-57 226.9 306 40.8
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 4.2e-57 226.1 343 40.2
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 9.3e-57 224.9 258 48.4
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.2e-56 224.6 346 40.2
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 3.5e-56 223.0 346 39.3
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 6.0e-56 222.2 276 42.8
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.1e-54 218.0 370 38.4
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.1e-54 218.0 370 38.4
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 1.6e-53 214.2 353 39.7
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 5.3e-52 209.1 331 38.1
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 6.0e-48 195.7 286 41.6
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 7.9e-48 195.3 257 44.4
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 1.9e-46 190.7 215 48.8
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 7.4e-46 188.7 333 36.0
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 2.0e-43 180.6 402 34.3
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 5.0e-42 176.0 219 47.0
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 6.7e-39 165.6 291 37.8
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 4.5e-35 152.9 209 41.6
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.0e-34 151.8 188 42.6
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.8e-29 133.7 241 36.1
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 9.1e-28 128.6 253 35.6
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 3.9e-23 113.2 188 38.3
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 3.8e-18 96.7 149 42.3
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 2.0e-14 84.3 98 45.9
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.3e-13 81.6 173 34.7
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 4.1e-12 76.6 100 45.0
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.7e-10 71.2 70 44.3
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 9.4e-09 65.5 168 28.0
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 9.4e-09 65.5 164 32.3
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 4.7e-08 63.2 168 27.4
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 8.0e-08 62.4 162 29.0
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 1.4e-07 61.6 99 32.3
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 3.0e-07 60.5 103 31.1
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 3.0e-07 60.5 103 31.1
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 3.0e-07 60.5 145 29.0
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 4.0e-07 60.1 102 35.3
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 6.8e-07 59.3 178 24.7
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 8.8e-07 58.9 109 33.9
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 8.8e-07 58.9 141 27.7
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 8.8e-07 58.9 142 28.9
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 8.8e-07 58.9 100 32.0
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 1.5e-06 58.2 100 33.0
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.5e-06 58.2 189 23.3
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 2.0e-06 57.8 208 26.0
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 2.6e-06 57.4 172 29.7
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 2.6e-06 57.4 160 30.6
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 2.6e-06 57.4 193 24.9
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 2.6e-06 57.4 173 29.5
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 3.4e-06 57.0 107 31.8
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 4.4e-06 56.6 156 26.3
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 4.4e-06 56.6 153 26.1
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 4.4e-06 56.6 244 28.3
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 5.7e-06 56.2 165 26.7
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 5.7e-06 56.2 193 26.9
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 7.5e-06 55.8 169 29.6
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 7.5e-06 55.8 169 29.6
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 7.5e-06 55.8 158 25.9
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 7.5e-06 55.8 164 25.0
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 7.5e-06 55.8 103 35.0
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 9.8e-06 55.5 99 31.3
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 9.8e-06 55.5 186 24.7


User provided reference genes

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