Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0072s0002 Marchantia polymorpha HOM05D003435 ORTHO05D004032 2.6e-32 141.4 68 100.0
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 2.7e-16 88.2 57 75.4
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 2.7e-13 78.2 57 64.9
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 3.6e-13 77.8 57 64.9
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 4.7e-13 77.4 57 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 4.7e-13 77.4 57 66.7
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 4.7e-13 77.4 57 59.6
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 1.0e-12 76.3 57 61.4
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.0e-12 76.3 57 61.4
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 1.0e-12 76.3 57 61.4
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 1.8e-12 75.5 57 57.9
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 1.8e-12 75.5 57 61.4
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.8e-12 75.5 57 61.4
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.8e-12 75.5 57 61.4
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 1.8e-12 75.5 57 61.4
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 1.8e-12 75.5 57 61.4
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 61.4
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 59.6
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 59.6
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 59.6
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 61.4
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 61.4
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 61.4
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 61.4
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 2.3e-12 75.1 57 61.4
Ah.10g029830 Amaranthus hybridus HOM05D003435 ORTHO05D004032 3.0e-12 74.7 57 63.2
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 3.0e-12 74.7 57 63.2
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 3.0e-12 74.7 57 63.2
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 3.0e-12 74.7 57 63.2
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 3.0e-12 74.7 56 62.5
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 4.0e-12 74.3 57 61.4
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 4.0e-12 74.3 57 61.4
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 4.0e-12 74.3 57 61.4
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 4.0e-12 74.3 57 57.9
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 4.0e-12 74.3 57 57.9
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 4.0e-12 74.3 57 61.4
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 4.0e-12 74.3 56 62.5
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 5.2e-12 73.9 56 62.5
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 5.2e-12 73.9 57 63.2
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 6.8e-12 73.6 57 61.4
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 6.8e-12 73.6 57 59.6
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 8.8e-12 73.2 56 60.7
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 59.6
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 8.8e-12 73.2 56 62.5
GSVIVG01004485001 Vitis vinifera HOM05D003435 ORTHO05D004032 8.8e-12 73.2 57 61.4
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 1.2e-11 72.8 57 57.9
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 1.2e-11 72.8 56 60.7
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 1.2e-11 72.8 56 60.7
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 1.2e-11 72.8 57 56.1
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 1.2e-11 72.8 57 59.6
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.2e-11 72.8 57 59.6
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
Os09g0408000 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 57.9
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 1.5e-11 72.4 57 59.6
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 2.0e-11 72.0 57 59.6
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 2.0e-11 72.0 57 57.9
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 2.0e-11 72.0 57 57.9
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 2.0e-11 72.0 57 57.9
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 2.6e-11 71.6 57 56.1
CDE05G1509 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.6e-11 71.6 57 57.9
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 2.6e-11 71.6 57 57.9
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 2.6e-11 71.6 56 58.9
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 2.6e-11 71.6 56 60.7
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 2.6e-11 71.6 57 57.9
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 2.6e-11 71.6 56 60.7
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 2.6e-11 71.6 56 60.7
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 3.4e-11 71.2 57 57.9
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 3.4e-11 71.2 57 57.9
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 3.4e-11 71.2 57 59.6
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 3.4e-11 71.2 56 60.7
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 3.4e-11 71.2 57 57.9
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 4.4e-11 70.9 56 58.9
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 4.4e-11 70.9 56 58.9
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 4.4e-11 70.9 57 59.6
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 5.7e-11 70.5 57 56.1
CDE05G0314 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 5.7e-11 70.5 57 57.9
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 5.7e-11 70.5 57 57.9
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 5.7e-11 70.5 57 56.1
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 5.7e-11 70.5 57 56.1
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 5.7e-11 70.5 57 57.9
BcaC09g50042 Brassica carinata HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 59.6
C01p29660 Brassica napus HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 59.6
BolC1t02908H Brassica oleracea HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 59.6
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 57.9
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 56.1
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 7.5e-11 70.1 56 57.1
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 57.9
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 57.9
vmacro17936 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 7.5e-11 70.1 57 57.9
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 9.8e-11 69.7 56 58.9
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 9.8e-11 69.7 56 58.9
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 9.8e-11 69.7 56 58.9
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 1.3e-10 69.3 57 57.9
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 1.7e-10 68.9 57 57.9
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.7e-10 68.9 57 56.1
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 1.7e-10 68.9 57 56.1
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 1.7e-10 68.9 56 58.9
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 1.7e-10 68.9 57 54.4
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 1.7e-10 68.9 57 56.1
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 2.2e-10 68.6 56 57.1
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 2.2e-10 68.6 57 56.1
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 3.7e-10 67.8 57 56.1
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 3.7e-10 67.8 57 56.1
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 3.7e-10 67.8 57 56.1
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 3.7e-10 67.8 57 54.4
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 3.7e-10 67.8 57 56.1
SHI23027 Sapria himalayana HOM05D003435 ORTHO05D004032 1.1e-09 66.2 57 50.9
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 2.9e-07 58.2 41 61.0
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 5.0e-07 57.4 42 59.5


User provided reference genes

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