Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 0.0e+00 1194.9 600 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.7e-252 875.9 560 77.9
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 2.1e-242 842.4 573 73.5
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 2.7e-237 825.5 545 75.4
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 3.6e-234 815.1 564 71.5
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.4e-233 813.1 576 70.1
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 5.2e-233 811.2 607 68.0
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.7e-231 806.2 540 73.5
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.7e-231 806.2 546 72.9
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.9e-231 805.4 549 72.1
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 6.4e-231 804.3 557 71.8
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 6.4e-231 804.3 548 72.3
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.4e-230 803.1 546 72.3
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.4e-230 803.1 548 71.9
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.4e-230 802.4 576 68.9
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 3.2e-230 802.0 548 72.1
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 4.1e-230 801.6 541 73.6
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 5.4e-230 801.2 548 71.7
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 7.1e-230 800.8 546 72.7
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 9.2e-230 800.4 547 71.7
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.6e-229 799.7 541 73.2
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.6e-229 799.7 548 71.5
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.1e-229 799.3 551 71.5
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.1e-229 799.3 540 72.2
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 2.7e-229 798.9 540 72.6
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 2.7e-229 798.9 547 72.0
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 3.5e-229 798.5 551 71.9
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 3.5e-229 798.5 540 72.6
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.6e-229 798.1 551 71.3
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 4.6e-229 798.1 541 72.5
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 4.6e-229 798.1 540 72.2
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 6.0e-229 797.7 547 71.3
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 7.8e-229 797.3 551 71.3
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 7.8e-229 797.3 548 71.5
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 7.8e-229 797.3 546 72.3
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.3e-228 796.6 576 68.6
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.7e-228 796.2 558 70.3
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.7e-228 796.2 546 72.3
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 2.3e-228 795.8 537 72.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.0e-228 795.4 541 73.2
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 3.0e-228 795.4 576 70.1
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.9e-228 795.0 547 72.9
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 5.1e-228 794.7 548 70.4
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.1e-228 794.7 541 73.2
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 5.1e-228 794.7 547 71.8
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 5.1e-228 794.7 576 69.8
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 5.1e-228 794.7 548 70.8
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.5e-227 793.1 546 71.6
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.9e-227 792.7 548 71.2
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 2.5e-227 792.3 548 71.5
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 2.5e-227 792.3 548 71.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 5.6e-227 791.2 540 72.6
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 5.6e-227 791.2 576 68.2
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 7.3e-227 790.8 546 71.8
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 9.6e-227 790.4 624 65.7
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 9.6e-227 790.4 541 71.7
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-226 790.0 540 72.6
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-226 790.0 546 71.6
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.6e-226 789.6 546 72.2
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 2.8e-226 788.9 548 70.8
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.8e-226 788.9 556 70.9
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 3.6e-226 788.5 541 72.6
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 6.2e-226 787.7 576 67.5
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 6.2e-226 787.7 545 71.4
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.1e-225 786.9 576 68.2
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 2.4e-225 785.8 576 67.4
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 5.2e-225 784.6 566 69.8
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 5.2e-225 784.6 547 70.6
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 5.2e-225 784.6 578 67.8
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 5.2e-225 784.6 548 70.1
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 5.2e-225 784.6 552 69.6
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 5.2e-225 784.6 555 71.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 9.0e-225 783.9 548 70.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 9.0e-225 783.9 537 71.9
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 9.0e-225 783.9 548 70.4
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.2e-224 783.5 548 69.9
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.2e-224 783.5 576 68.1
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.2e-224 783.5 541 71.9
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.2e-224 783.5 548 68.8
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.5e-224 783.1 541 71.9
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.6e-224 782.3 558 70.6
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 3.4e-224 781.9 579 68.9
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 4.4e-224 781.6 546 70.9
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 5.8e-224 781.2 578 68.0
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 5.8e-224 781.2 529 73.0
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.7e-223 779.6 557 69.3
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.2e-223 779.2 543 70.0
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.9e-223 778.1 570 68.9
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.1e-222 776.9 542 71.0
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.4e-222 775.8 572 69.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 1.7e-220 769.6 549 69.9
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 4.8e-218 761.5 574 67.2
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 4.9e-215 751.5 541 70.1
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.7e-213 745.7 541 69.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 4.6e-213 745.0 547 67.8
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.8e-212 743.0 573 66.3
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 8.1e-210 734.2 548 67.5
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.2e-208 730.3 595 65.2
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.0e-208 729.6 582 65.1
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 4.5e-208 728.4 605 62.5
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 7.6e-208 727.6 536 69.2
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 8.4e-207 724.2 536 69.0
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.3e-204 716.8 486 73.0
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.9e-204 715.3 570 66.0
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 3.4e-200 702.2 581 63.5
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.1e-198 697.2 492 70.1
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.9e-198 696.4 569 64.7
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 1.2e-192 677.2 545 63.7
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.0e-192 676.4 470 70.9
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 3.2e-190 669.1 572 61.7
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 5.0e-183 645.2 540 62.4
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 4.4e-179 632.1 468 66.5
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 6.7e-172 608.2 512 62.9
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.0e-163 580.1 407 71.7
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 3.1e-161 572.8 531 58.8
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.8e-153 547.0 551 52.5
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.2e-146 523.5 366 75.1
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 4.5e-144 515.8 579 50.3
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 4.3e-142 509.2 417 65.9
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.8e-140 503.8 560 52.1
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 5.2e-140 502.3 348 74.4
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.4e-116 424.5 256 80.9
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 1.4e-73 281.6 199 64.3
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.7e-69 268.1 201 60.7
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.8e-55 221.5 368 39.7
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 3.5e-51 207.2 213 49.3
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 7.7e-51 206.1 239 46.4
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 5.9e-43 179.9 127 74.0
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.3e-37 162.2 154 57.8
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 7.0e-36 156.4 118 61.9
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.0e-31 142.5 135 54.1
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.9e-29 134.4 313 31.3
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 2.4e-28 131.3 105 64.8
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 2.3e-26 124.8 312 32.7
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 3.7e-21 107.5 73 71.2
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 3.3e-17 94.4 57 73.7
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 4.3e-17 94.0 61 75.4
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 7.1e-12 76.6 126 41.3
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 2.7e-11 74.7 111 44.1
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 4.6e-11 73.9 45 71.1
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.3e-10 72.4 101 42.6
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 8.9e-07 59.7 37 78.4
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 8.9e-07 59.7 41 56.1
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 1.5e-06 58.9 52 63.5
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 2.6e-06 58.2 44 59.1


User provided reference genes

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