Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 6.4e-293 1010.0 501 100.0
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-120 436.4 495 49.9
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-116 424.5 345 62.6
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.9e-113 412.1 347 57.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 7.5e-108 395.2 349 57.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.4e-106 390.2 340 56.8
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.2e-105 387.9 344 56.4
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 2.0e-105 387.1 346 54.9
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 2.7e-105 386.7 340 55.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 3.5e-105 386.3 337 56.1
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.5e-105 386.3 340 55.6
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.0e-104 384.8 340 55.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-104 384.4 339 55.8
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.3e-104 383.6 344 55.8
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.3e-104 383.6 348 54.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.9e-104 383.3 339 55.8
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 3.8e-104 382.9 343 55.1
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 6.6e-104 382.1 318 58.5
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 8.6e-104 381.7 344 55.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 8.6e-104 381.7 338 55.3
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.1e-103 381.3 341 55.7
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-103 381.3 326 56.7
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.5e-103 380.9 338 56.2
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.9e-103 380.6 341 55.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.9e-103 380.6 340 56.5
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.5e-103 380.2 348 54.9
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 4.2e-103 379.4 333 56.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 7.2e-103 378.6 328 57.9
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 9.5e-103 378.3 341 54.8
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.6e-102 377.5 340 54.7
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.6e-102 377.5 335 57.0
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.1e-102 377.1 338 56.2
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.8e-102 376.7 311 60.8
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 6.1e-102 375.6 338 55.9
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 1.0e-101 374.8 327 57.2
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.4e-101 374.4 339 56.6
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.3e-101 373.6 337 54.9
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.0e-101 373.2 338 55.3
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.0e-101 373.2 347 53.6
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.2e-101 372.5 352 52.8
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 5.2e-101 372.5 342 54.4
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 6.8e-101 372.1 329 57.8
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 8.9e-101 371.7 380 51.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.9e-101 371.7 380 51.3
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 8.9e-101 371.7 327 58.1
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 8.9e-101 371.7 350 56.0
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.5e-100 370.9 344 53.8
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.5e-100 370.9 350 52.9
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.6e-100 370.2 391 49.6
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.6e-100 370.2 334 54.5
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 3.4e-100 369.8 340 55.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 5.7e-100 369.0 350 53.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 5.7e-100 369.0 350 53.1
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.7e-100 369.0 380 51.3
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 9.8e-100 368.2 313 56.9
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 9.8e-100 368.2 358 53.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-99 367.9 342 54.4
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-99 367.5 350 52.9
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-99 367.1 342 54.1
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-99 367.1 346 53.2
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.2e-99 367.1 352 52.8
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 3.7e-99 366.3 352 50.6
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 3.7e-99 366.3 337 55.8
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.7e-99 366.3 344 54.7
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.9e-99 365.9 351 52.4
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 4.9e-99 365.9 327 57.2
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 6.3e-99 365.5 333 56.2
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 8.3e-99 365.2 333 56.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 8.3e-99 365.2 333 56.2
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-98 364.8 345 53.6
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.1e-98 364.8 358 53.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.4e-98 364.4 342 54.1
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.4e-98 364.4 355 51.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.8e-98 364.0 417 45.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.4e-98 363.6 349 51.6
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.1e-98 362.8 345 53.3
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.1e-98 362.8 346 52.9
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 9.2e-98 361.7 339 54.6
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 9.2e-98 361.7 335 54.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 9.2e-98 361.7 344 53.8
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.2e-97 361.3 340 54.1
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-97 361.3 346 52.6
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.6e-97 360.9 327 54.7
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.0e-97 360.5 332 56.0
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.7e-97 360.1 338 53.0
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 4.5e-97 359.4 346 52.3
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.5e-97 359.4 340 52.6
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.5e-97 359.4 357 51.3
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 5.9e-97 359.0 340 53.5
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 7.8e-97 358.6 339 53.4
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.3e-96 357.8 301 58.8
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.3e-96 357.1 328 52.7
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.9e-96 356.3 327 54.7
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 6.6e-96 355.5 318 56.0
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.9e-95 354.0 341 53.1
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.3e-95 353.2 338 53.3
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 4.3e-95 352.8 341 52.8
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.1e-94 350.5 341 53.1
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.1e-94 350.5 339 52.5
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 3.6e-94 349.7 341 52.8
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 3.6e-94 349.7 341 53.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.6e-94 349.7 339 53.1
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 8.0e-94 348.6 341 52.8
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 8.0e-94 348.6 359 50.7
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-93 347.8 323 55.1
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.3e-93 347.1 338 52.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.9e-93 345.1 339 52.8
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-92 344.7 340 51.8
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.5e-92 344.4 339 52.2
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.4e-92 343.2 339 52.2
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 4.4e-92 342.8 316 54.7
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.8e-92 342.4 336 52.1
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.1e-90 338.2 337 52.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 7.0e-90 335.5 326 52.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.2e-89 334.7 290 57.2
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.9e-87 327.4 311 54.0
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 4.3e-87 326.2 339 50.1
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.2e-86 324.7 319 52.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.8e-86 323.6 355 48.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.4e-84 316.6 277 57.8
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.6e-81 307.8 295 54.2
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.5e-76 291.2 295 53.9
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.4e-76 289.7 343 47.2
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.7e-75 287.7 310 47.1
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.3e-71 273.5 289 49.5
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.8e-70 270.4 317 46.4
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-69 267.7 312 45.8
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 4.4e-68 263.1 340 42.4
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-67 261.2 321 42.4
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.8e-67 260.0 340 43.8
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.9e-67 259.6 321 43.6
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-65 254.6 285 46.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 8.7e-64 248.8 314 42.7
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.8e-62 243.8 241 52.7
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-61 241.1 290 42.8
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-58 231.9 267 45.3
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.2e-58 229.9 318 43.1
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.1e-57 227.6 233 52.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 7.3e-55 219.2 344 38.4
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.7e-51 208.0 153 64.7
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.4e-50 204.1 307 38.1
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 8.7e-48 195.7 213 46.5
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.1e-46 191.0 354 34.5
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.9e-45 186.0 165 52.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.5e-44 183.3 210 51.0
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.9e-43 180.6 158 59.5
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.5e-42 177.6 315 32.1
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.5e-41 173.7 225 44.9
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 4.6e-41 173.3 174 56.3
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.3e-40 171.0 149 61.1
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-37 161.8 291 35.4
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-36 158.3 314 31.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-35 155.2 291 35.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.5e-35 152.9 291 35.1
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-34 151.0 142 57.0
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-33 147.5 294 32.3
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-31 141.4 290 32.4
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.8e-30 137.5 121 61.2
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.7e-30 137.1 132 56.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.2e-27 127.9 292 30.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 5.0e-27 126.7 330 26.7
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.2e-26 122.9 101 55.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-24 118.6 190 37.4
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.7e-24 116.3 312 28.5
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.3e-23 113.6 232 30.2
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.7e-22 110.5 99 52.5
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.8e-21 108.2 313 29.1
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.4e-21 107.8 306 30.4
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-20 105.5 317 27.1
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 5.9e-20 103.2 80 63.8
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.9e-19 100.9 299 29.1
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-16 92.0 112 41.1
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 5.1e-16 90.1 368 24.7
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 6.7e-16 89.7 308 27.9
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-14 85.5 146 36.3
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.2e-14 84.7 77 57.1
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 6.7e-08 63.2 41 75.6
PRCOL_00005847 Prasinoderma coloniale HOM05D047694 ORTHO05D049123 4.8e-06 57.0 296 23.6


User provided reference genes

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