Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 2.7e-224 781.6 369 100.0
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.3e-103 378.6 363 50.7
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.5e-101 371.7 352 50.9
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.9e-100 370.2 363 48.8
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.2e-99 367.5 336 51.5
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.7e-99 366.3 363 48.8
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 4.7e-99 365.5 363 48.8
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 8.0e-99 364.8 356 49.2
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.0e-98 364.4 361 48.5
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.0e-98 364.4 365 47.9
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 1.4e-98 364.0 365 47.1
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.4e-98 364.0 363 47.7
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.4e-98 364.0 360 48.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.8e-98 363.6 363 50.7
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.8e-98 361.7 363 48.2
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 8.8e-98 361.3 363 48.2
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 8.8e-98 361.3 333 49.5
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.2e-97 360.9 351 49.6
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.5e-97 360.5 346 49.7
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-97 360.5 345 49.9
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.5e-97 360.5 336 50.6
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 2.6e-97 359.8 364 46.7
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.6e-97 359.8 335 49.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.6e-97 359.8 335 49.9
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.6e-97 359.8 363 47.1
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 3.4e-97 359.4 338 50.9
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 4.4e-97 359.0 336 50.6
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 4.4e-97 359.0 357 47.6
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 4.4e-97 359.0 357 47.6
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 4.4e-97 359.0 362 47.8
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 9.7e-97 357.8 358 47.8
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.3e-96 357.5 357 47.6
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.3e-96 357.5 367 45.8
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.3e-96 357.5 351 49.0
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.3e-96 357.5 338 49.7
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.7e-96 357.1 338 50.3
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.2e-96 356.7 363 46.3
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.2e-96 356.7 362 47.8
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.2e-96 356.7 317 52.7
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.8e-96 356.3 368 47.3
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.8e-96 356.3 359 48.2
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.8e-96 356.3 346 49.1
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.8e-96 356.3 364 46.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 4.8e-96 355.5 359 47.4
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 6.3e-96 355.1 352 48.6
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 6.3e-96 355.1 368 47.3
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 8.3e-96 354.8 337 49.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 8.3e-96 354.8 366 48.1
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.1e-95 354.4 357 47.1
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.1e-95 354.4 357 47.1
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.1e-95 354.4 347 49.6
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-95 354.4 317 52.7
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.4e-95 354.0 363 47.9
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.4e-95 354.0 351 49.0
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.8e-95 353.6 346 48.8
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.8e-95 353.6 349 48.4
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.8e-95 353.6 344 49.4
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 4.1e-95 352.4 311 52.7
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 5.3e-95 352.1 314 52.9
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 5.3e-95 352.1 338 49.4
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 9.1e-95 351.3 365 47.7
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.2e-94 350.9 357 48.2
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.6e-94 350.5 361 46.0
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.6e-94 350.5 335 49.6
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 3.5e-94 349.4 335 48.7
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.9e-94 348.6 367 46.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 7.7e-94 348.2 366 45.6
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.7e-94 348.2 361 46.3
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 7.7e-94 348.2 353 46.5
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 7.7e-94 348.2 362 46.7
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.0e-93 347.8 335 49.0
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.0e-93 347.8 374 45.5
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.0e-93 347.8 349 47.9
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.3e-93 347.4 359 46.2
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.9e-93 346.3 333 47.1
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.8e-93 345.9 333 50.2
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 3.8e-93 345.9 328 50.6
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.8e-93 345.9 333 46.8
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 8.5e-93 344.7 372 46.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.1e-92 344.4 349 47.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.5e-92 344.0 349 48.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.5e-92 344.0 336 47.6
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.9e-92 343.6 281 54.4
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.9e-92 343.6 354 48.3
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 2.5e-92 343.2 372 46.2
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 4.2e-92 342.4 361 46.0
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.2e-92 342.4 348 48.6
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 5.5e-92 342.0 348 47.4
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 5.5e-92 342.0 349 47.9
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 7.2e-92 341.7 360 44.4
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.2e-91 340.9 357 45.9
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.6e-91 340.5 345 49.0
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.6e-91 340.5 344 47.4
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.0e-90 337.8 308 49.7
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 5.2e-90 335.5 345 47.0
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 5.2e-90 335.5 360 44.7
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.0e-89 333.6 299 50.5
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.4e-89 332.8 346 47.1
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.4e-89 332.8 360 44.4
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.3e-88 330.9 360 43.9
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.7e-88 330.5 365 45.2
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 2.4e-87 326.6 351 47.0
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 5.4e-87 325.5 271 56.1
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-86 324.3 271 55.7
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-85 321.2 271 55.4
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.7e-85 320.5 452 37.8
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.9e-85 319.7 362 44.2
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.1e-84 317.8 358 43.6
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.2e-84 315.8 285 51.9
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.1e-83 313.5 356 46.1
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.8e-83 313.2 408 40.9
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.7e-83 312.4 346 45.4
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.1e-83 312.0 346 45.4
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 6.1e-83 312.0 337 45.7
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.5e-81 307.4 318 46.2
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.7e-80 302.8 336 45.8
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.8e-79 300.4 454 37.2
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 3.5e-78 296.2 269 51.7
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 5.6e-76 288.9 346 43.4
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.8e-74 283.9 267 49.4
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 8.9e-74 281.6 253 52.6
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.8e-73 278.9 293 45.1
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 9.8e-73 278.1 363 40.5
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.9e-64 250.0 232 50.4
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.9e-63 247.3 317 41.6
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.1e-63 245.4 200 54.0
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 6.0e-62 242.3 227 50.2
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.3e-60 236.5 210 52.4
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.2e-58 229.2 266 43.6
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 7.6e-57 225.3 179 57.0
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 5.1e-53 212.6 205 48.8
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.5e-52 210.3 172 54.7
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.9e-48 196.1 181 50.8
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.8e-46 188.7 189 46.6
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 3.0e-45 186.8 194 44.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.6e-43 181.0 239 41.4
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.0e-37 161.8 244 36.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.4e-31 139.4 99 57.6
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.8e-29 134.4 159 44.0
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-28 131.7 138 47.1
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.8e-21 107.8 129 41.1
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.1e-14 84.3 104 40.4
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 7.4e-12 75.9 140 30.0
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.7e-11 73.6 104 38.5
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-07 62.0 108 34.3


User provided reference genes

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