Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0070s0022 Marchantia polymorpha HOM05D018443 ORTHO05D015161 5.6e-283 976.9 463 100.0
Mapoly0020s0079 Marchantia polymorpha HOM05D018443 ORTHO05D015161 1.1e-86 324.7 441 40.6
Mapoly0020s0089 Marchantia polymorpha HOM05D018443 ORTHO05D015161 4.7e-80 302.8 457 38.7
Mapoly0020s0080 Marchantia polymorpha HOM05D018443 ORTHO05D015161 1.2e-78 298.1 453 38.6
Mapoly0020s0088 Marchantia polymorpha HOM05D018443 ORTHO05D015161 3.6e-72 276.6 436 38.1
Mapoly0040s0072 Marchantia polymorpha HOM05D028835 ORTHO05D015161 1.1e-33 148.7 426 28.2
Mapoly0012s0051 Marchantia polymorpha HOM05D018443 ORTHO05D015161 1.5e-30 138.3 450 27.1
Mapoly0485s0001 Marchantia polymorpha HOM05D028835 ORTHO05D015161 1.3e-29 135.2 481 26.0
Mapoly0027s0160 Marchantia polymorpha HOM05D028835 ORTHO05D015161 5.4e-28 129.8 471 24.6
Mapoly0310s0001 Marchantia polymorpha HOM05D028835 ORTHO05D015161 1.5e-25 121.7 474 24.3
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 3.0e-18 97.4 215 27.4
Mapoly0018s0028 Marchantia polymorpha HOM05D018443 ORTHO05D015161 1.6e-16 91.7 138 39.1
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.1e-16 91.3 425 23.1
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 1.1e-15 89.0 213 26.3
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.4e-15 88.6 447 23.3
AagrBONN_evm.TU.Sc2ySwM_228.4047 Anthoceros agrestis HOM05D004302 ORTHO05D010190 2.4e-15 87.8 443 21.4
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 3.4e-14 84.0 381 23.9
Pp3c9_6080 Physcomitrium patens HOM05D002809 ORTHO05D004563 5.8e-14 83.2 220 25.9
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.1e-12 79.0 269 26.4
Pp3c15_17390 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.1e-12 79.0 217 25.3
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 1.4e-12 78.6 246 26.8
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 4.2e-12 77.0 222 25.7
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 4.2e-12 77.0 225 25.3
Pp3c9_20960 Physcomitrium patens HOM05D002809 ORTHO05D004939 7.1e-12 76.3 217 24.9
Pp3c9_19230 Physcomitrium patens HOM05D021600 ORTHO05D015161 6.0e-11 73.2 255 25.9
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 7.9e-11 72.8 353 22.7
SEGI_08933 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 7.9e-11 72.8 224 24.6
Pp3c24_1980 Physcomitrium patens HOM05D003005 ORTHO05D004563 1.3e-10 72.0 226 24.3
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.3e-10 72.0 211 23.2
SEGI_17583 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 1.3e-10 72.0 223 24.7
Mapoly0055s0081 Marchantia polymorpha HOM05D003005 ORTHO05D004939 3.0e-10 70.9 414 21.7
Pp3c1_41170 Physcomitrium patens HOM05D002809 ORTHO05D015161 3.0e-10 70.9 218 25.7
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 3.9e-10 70.5 217 24.9
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.1e-10 70.1 257 25.3
Pp3c6_8830 Physcomitrium patens HOM05D004302 ORTHO05D014674 5.1e-10 70.1 215 24.7
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 6.7e-10 69.7 219 21.9
Pp3c26_8170 Physcomitrium patens HOM05D004302 ORTHO05D026051 6.7e-10 69.7 253 24.9
Pp3c14_15830 Physcomitrium patens HOM05D002809 ORTHO05D009385 8.7e-10 69.3 300 24.3
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.9e-09 68.2 223 22.0
Pp3c14_15770 Physcomitrium patens HOM05D003005 ORTHO05D004939 3.3e-09 67.4 263 24.3
Mapoly0186s0014 Marchantia polymorpha HOM05D004302 ORTHO05D004939 5.6e-09 66.6 251 23.1
HanXRQChr05g0150951 Helianthus annuus HOM05D007423 ORTHO05D009091 7.4e-09 66.2 446 21.1
Mapoly0001s0513 Marchantia polymorpha HOM05D008342 ORTHO05D010190 7.4e-09 66.2 227 26.4
SEGI_38976 Sequoiadendron giganteum HOM05D002809 ORTHO05D004939 7.4e-09 66.2 225 23.1
DCAR_005370 Daucus carota HOM05D003005 ORTHO05D004170 9.6e-09 65.9 208 25.0
Mapoly0063s0077 Marchantia polymorpha HOM05D002809 ORTHO05D004939 9.6e-09 65.9 217 24.4
AagrBONN_evm.TU.Sc2ySwM_228.2355 Anthoceros agrestis HOM05D002809 ORTHO05D007546 1.3e-08 65.5 320 21.9
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 2.1e-08 64.7 224 24.6
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 2.8e-08 64.3 217 22.6
Ca_16451_v3 Cicer arietinum L. HOM05D002809 ORTHO05D004563 3.7e-08 63.9 252 21.8
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 4.8e-08 63.5 217 26.7
MD07G1142500 Malus domestica HOM05D003005 ORTHO05D004170 4.8e-08 63.5 210 25.2
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 4.8e-08 63.5 215 24.7
SMO116G0047 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 4.8e-08 63.5 330 24.5
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 4.8e-08 63.5 210 21.9
ATR0561G142 Amborella trichopoda HOM05D002809 ORTHO05D004563 6.2e-08 63.2 281 21.4
Aqoxy7G00225 Aquilegia oxysepala HOM05D003005 ORTHO05D004170 6.2e-08 63.2 207 24.2
A09p38610 Brassica napus HOM05D002809 ORTHO05D004563 8.1e-08 62.8 245 21.6
BolC1t00526H Brassica oleracea HOM05D006415 ORTHO05D008549 8.1e-08 62.8 361 23.5
CARHR241190 Cardamine hirsuta HOM05D006415 ORTHO05D008549 8.1e-08 62.8 231 23.8
AUR62010298 Chenopodium quinoa HOM05D000007 ORTHO05D000017 8.1e-08 62.8 228 23.2
Pp3c11_19480 Physcomitrium patens HOM05D004302 ORTHO05D009361 8.1e-08 62.8 227 24.7
SMO239G0172 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 1.1e-07 62.4 245 22.9
C01p05460 Brassica napus HOM05D006415 ORTHO05D008549 1.4e-07 62.0 360 23.1
BraA01t00483Z Brassica rapa HOM05D006415 ORTHO05D008549 1.4e-07 62.0 358 23.7
BraA09t39366Z Brassica rapa HOM05D002809 ORTHO05D004563 1.4e-07 62.0 245 21.2
Medtr3g085160 Medicago truncatula HOM05D002809 ORTHO05D004563 1.4e-07 62.0 247 22.3
Pp3c7_3560 Physcomitrium patens HOM05D004302 ORTHO05D010190 1.4e-07 62.0 223 23.8
HPP92_002171 Vanilla planifolia HOM05D006415 ORTHO05D008549 1.4e-07 62.0 445 22.5
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 1.8e-07 61.6 217 23.0
MSTRG.10561 Avicennia marina HOM05D004302 ORTHO05D004939 1.8e-07 61.6 213 25.4
BcaC05g26549 Brassica carinata HOM05D002809 ORTHO05D004563 1.8e-07 61.6 245 21.2
C05p26040 Brassica napus HOM05D002809 ORTHO05D004563 1.8e-07 61.6 245 21.2
AUR62039089 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.8e-07 61.6 220 25.5
Pp3c3_5460 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.8e-07 61.6 212 23.1
Sed0008353 Sechium edule HOM05D003005 ORTHO05D004170 1.8e-07 61.6 206 23.8
Glyma.11G251600 Glycine max HOM05D002809 ORTHO05D004563 2.4e-07 61.2 253 21.7
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 3.1e-07 60.8 284 20.8
Mapoly0093s0087 Marchantia polymorpha HOM05D008342 ORTHO05D010190 3.1e-07 60.8 326 24.8
Pp3c22_23060 Physcomitrium patens HOM05D004302 ORTHO05D317443 3.1e-07 60.8 221 20.8
Pp3c7_15830 Physcomitrium patens HOM05D021600 ORTHO05D030467 3.1e-07 60.8 244 25.8
SMO361G0323 Selaginella moellendorffii HOM05D002809 ORTHO05D004939 3.1e-07 60.8 245 22.9
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 3.1e-07 60.8 240 22.5
BraA07t28977Z Brassica rapa HOM05D002809 ORTHO05D004563 4.0e-07 60.5 241 22.8
Thecc.01G349400 Theobroma cacao HOM05D003005 ORTHO05D004170 4.0e-07 60.5 210 24.8
A01p05010 Brassica napus HOM05D006415 ORTHO05D008549 5.3e-07 60.1 358 23.5
BolC5t31323H Brassica oleracea HOM05D002809 ORTHO05D004563 5.3e-07 60.1 245 21.2
Nitab4.5_0004217g0020 Nicotiana tabacum HOM05D000664 ORTHO05D000491 5.3e-07 60.1 208 26.0
Pp3c24_18510 Physcomitrium patens HOM05D002809 ORTHO05D004939 5.3e-07 60.1 339 24.8
Atru.chr7.1810 Acer truncatum HOM05D006415 ORTHO05D008549 6.9e-07 59.7 233 24.0
AT1G27340 Arabidopsis thaliana HOM05D002809 ORTHO05D004563 6.9e-07 59.7 228 21.1
BcaC05g26739 Brassica carinata HOM05D002809 ORTHO05D004563 6.9e-07 59.7 247 20.6
CsaV3_3G008300 Cucumis sativus L. HOM05D003005 ORTHO05D004170 6.9e-07 59.7 206 22.8
Gohir.D08G148100 Gossypium hirsutum HOM05D003005 ORTHO05D004170 6.9e-07 59.7 210 24.3
Pp3c26_600 Physcomitrium patens HOM05D003005 ORTHO05D006906 6.9e-07 59.7 208 25.0
CSS0036768 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 9.0e-07 59.3 250 22.4
CAN.G1399.1 Capsicum annuum HOM05D006415 ORTHO05D008549 9.0e-07 59.3 215 24.7
Duzib138G1905 Durio zibethinus HOM05D003005 ORTHO05D004170 9.0e-07 59.3 212 25.5
Pp3c19_12650 Physcomitrium patens HOM05D004302 ORTHO05D004939 9.0e-07 59.3 236 23.3
ATR0584G262 Amborella trichopoda HOM05D002809 ORTHO05D017280 1.2e-06 58.9 305 22.0
Gorai.004G153700 Gossypium raimondii HOM05D003005 ORTHO05D004170 1.2e-06 58.9 210 23.8
MD13G1120600 Malus domestica HOM05D002809 ORTHO05D004563 1.2e-06 58.9 283 22.3
Manes.01G250600 Manihot esculenta HOM05D003005 ORTHO05D004170 1.2e-06 58.9 209 24.4
SGA_v2.0_scaffold22G09921 Striga asiatica HOM05D006415 ORTHO05D008549 1.2e-06 58.9 389 21.1
AagrBONN_evm.TU.Sc2ySwM_228.1930 Anthoceros agrestis HOM05D004302 ORTHO05D004939 1.5e-06 58.5 225 22.7
A07p11920 Brassica napus HOM05D002809 ORTHO05D004563 1.5e-06 58.5 241 21.2
COL.COLO4_20416 Corchorus olitorius HOM05D002809 ORTHO05D004563 1.5e-06 58.5 252 21.4
Dinv17569 Davidia involucrata HOM05D002809 ORTHO05D004563 1.5e-06 58.5 284 20.8
Gohir.D11G098400 Gossypium hirsutum HOM05D003005 ORTHO05D004170 1.5e-06 58.5 210 23.3
Mapoly0085s0028 Marchantia polymorpha HOM05D008342 ORTHO05D010190 1.5e-06 58.5 323 21.1
Pp3c6_7720 Physcomitrium patens HOM05D011382 ORTHO05D308313 1.5e-06 58.5 227 22.9
Rhsim03G0162100 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.5e-06 58.5 216 26.9
RcHm_v2.0_Chr4g0430081 Rosa chinensis HOM05D002809 ORTHO05D004563 1.5e-06 58.5 251 21.1
CAN.G650.12 Capsicum annuum HOM05D000007 ORTHO05D000039 2.0e-06 58.2 298 24.8
AUR62019478 Chenopodium quinoa HOM05D005977 ORTHO05D007546 2.0e-06 58.2 174 27.0
ClCG05G000990 Citrullus lanatus HOM05D003005 ORTHO05D004170 2.0e-06 58.2 206 22.8
Migut.A00333 Erythranthe guttata HOM05D006415 ORTHO05D008549 2.0e-06 58.2 218 25.7
Gorai.007G104600 Gossypium raimondii HOM05D003005 ORTHO05D004170 2.0e-06 58.2 210 23.3
Lalb_Chr23g0278141 Lupinus albus HOM05D002809 ORTHO05D004563 2.0e-06 58.2 251 21.5
Pp3c23_11450 Physcomitrium patens HOM05D003005 ORTHO05D310686 2.0e-06 58.2 221 22.2
Psat5g096960 Pisum sativum HOM05D002809 ORTHO05D004563 2.0e-06 58.2 251 20.7
TPR.G17783 Trifolium pratense HOM05D002809 ORTHO05D004563 2.0e-06 58.2 247 21.9
vmacro13211 Vaccinium macrocarpon HOM05D003005 ORTHO05D004170 2.0e-06 58.2 217 26.3
Mapoly0048s0061 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.6e-06 57.8 220 23.2
Mapoly0144s0012 Marchantia polymorpha HOM05D008342 ORTHO05D010190 2.6e-06 57.8 223 26.0
Medtr7g066850 Medicago truncatula HOM05D000007 ORTHO05D000017 2.6e-06 57.8 224 25.0
Pp3c26_14690 Physcomitrium patens HOM05D004302 ORTHO05D004939 2.6e-06 57.8 262 23.7
CSS0014036 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 3.4e-06 57.4 249 21.3
Ciclev10010172m.g Citrus clementina HOM05D006415 ORTHO05D008549 3.4e-06 57.4 232 23.7
Lsat_1_v5_gn_3_30801 Lactuca sativa HOM05D002809 ORTHO05D004563 3.4e-06 57.4 276 21.7
Os01g0923900 Oryza sativa ssp. japonica HOM05D002809 ORTHO05D004563 3.4e-06 57.4 249 24.5
DCAR_028594 Daucus carota HOM05D000664 ORTHO05D000491 4.5e-06 57.0 211 24.6
Lj3P1070T8 Lonicera japonica HOM05D002809 ORTHO05D004563 4.5e-06 57.0 287 20.2
Lj4g0005095 Lotus japonicus HOM05D002809 ORTHO05D004563 4.5e-06 57.0 237 21.5
Lalb_Chr04g0258341 Lupinus albus HOM05D004302 ORTHO05D004939 4.5e-06 57.0 220 25.5
Pp3c22_14550 Physcomitrium patens HOM05D002809 ORTHO05D009385 4.5e-06 57.0 218 20.6
Prupe.1G423100 Prunus persica HOM05D007423 ORTHO05D009091 4.5e-06 57.0 231 24.7
SEGI_32653 Sequoiadendron giganteum HOM05D006415 ORTHO05D008549 4.5e-06 57.0 56 41.1
TAR629G1933 Trochodendron aralioides HOM05D002809 ORTHO05D004563 4.5e-06 57.0 248 22.6
EL10Ac8g20568 Beta vulgaris HOM05D000007 ORTHO05D000017 5.8e-06 56.6 213 25.8
C07p17870 Brassica napus HOM05D002809 ORTHO05D004563 5.8e-06 56.6 246 21.5
BolC7t42293H Brassica oleracea HOM05D002809 ORTHO05D004563 5.8e-06 56.6 246 21.5
Haze_22440 Corylus avellana HOM05D007423 ORTHO05D009091 5.8e-06 56.6 86 36.0
Manes.16G088100 Manihot esculenta HOM05D006415 ORTHO05D008549 5.8e-06 56.6 241 23.7
Prupe.1G224600 Prunus persica HOM05D002809 ORTHO05D004563 5.8e-06 56.6 251 21.5
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.8e-06 56.6 216 25.9
THA.LOC104803713 Tarenaya hassleriana HOM05D006415 ORTHO05D008549 5.8e-06 56.6 234 23.1
Carub.0008s0548 Capsella rubella HOM05D007423 ORTHO05D009091 7.6e-06 56.2 226 26.1
Gohir.A13G188500 Gossypium hirsutum HOM05D006415 ORTHO05D008549 7.6e-06 56.2 212 24.5
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 7.6e-06 56.2 282 21.6
Psat4g213360 Pisum sativum HOM05D003005 ORTHO05D004170 7.6e-06 56.2 204 23.5
RcHm_v2.0_Chr5g0030551 Rosa chinensis HOM05D000007 ORTHO05D000017 7.6e-06 56.2 229 23.1
Sp7g30910 Schrenkiella parvula HOM05D006415 ORTHO05D008549 7.6e-06 56.2 207 26.1
GSVIVG01035605001 Vitis vinifera HOM05D006415 ORTHO05D008549 7.6e-06 56.2 228 22.8
Zm00001eb364210 Zea mays HOM05D002809 ORTHO05D004563 7.6e-06 56.2 242 25.2
Aa31LG7G9860 Aethionema arabicum HOM05D002809 ORTHO05D004563 9.9e-06 55.8 254 22.8
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 9.9e-06 55.8 282 21.3


User provided reference genes

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