Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 9.9e-220 766.5 402 100.0
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.1e-104 384.4 301 63.5
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 6.9e-104 381.7 352 57.7
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.2e-95 354.4 372 50.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.6e-95 351.7 366 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 6.4e-94 348.6 312 57.1
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.1e-93 347.8 353 52.4
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 9.3e-93 344.7 379 51.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.6e-92 344.0 335 53.4
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.5e-92 342.8 308 54.5
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 4.6e-92 342.4 365 52.6
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 6.0e-92 342.0 299 56.9
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.3e-91 340.1 372 51.6
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.0e-91 339.7 374 47.9
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.1e-90 337.8 368 48.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.1e-90 337.8 372 50.0
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.1e-90 337.8 299 56.2
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.5e-90 337.4 372 51.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 2.5e-90 336.7 365 49.9
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.3e-90 335.9 366 50.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 4.3e-90 335.9 373 51.5
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.6e-90 335.5 369 51.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 5.6e-90 335.5 299 55.9
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.6e-90 335.5 368 50.0
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 7.4e-90 335.1 376 47.6
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 7.4e-90 335.1 367 48.0
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.6e-90 334.7 380 47.9
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.8e-89 332.4 377 49.1
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.4e-88 330.9 372 49.7
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.4e-88 330.1 374 48.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.4e-88 330.1 373 48.3
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.1e-88 329.7 372 49.7
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.1e-88 329.7 299 55.5
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.1e-88 329.7 297 53.9
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 5.3e-88 328.9 371 48.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 5.3e-88 328.9 372 47.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 9.0e-88 328.2 370 48.6
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.2e-87 327.8 371 48.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 2.6e-87 326.6 370 48.4
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.8e-87 325.5 371 47.4
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.0e-86 324.7 367 47.7
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.0e-86 324.7 276 56.9
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.3e-86 324.3 374 48.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.9e-86 323.2 371 47.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 4.9e-86 322.4 367 48.0
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 8.4e-86 321.6 298 55.4
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.9e-85 320.5 299 53.5
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.9e-85 320.5 372 47.3
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.5e-85 320.1 369 48.0
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.5e-85 320.1 382 46.6
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.5e-85 320.1 372 47.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 4.2e-85 319.3 291 55.0
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.5e-85 318.9 367 48.0
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 5.5e-85 318.9 374 48.1
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 7.1e-85 318.5 362 46.7
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.3e-85 318.2 377 46.7
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 9.3e-85 318.2 351 48.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.3e-85 318.2 290 54.1
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.6e-84 317.4 370 48.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.1e-84 317.0 377 46.7
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.7e-84 316.6 374 48.1
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.7e-84 316.6 375 48.3
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.3e-83 314.3 370 47.3
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.8e-83 313.9 374 46.5
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 6.7e-83 312.0 300 54.0
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 6.7e-83 312.0 369 47.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 6.7e-83 312.0 332 49.4
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.5e-82 310.8 370 45.7
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.5e-82 310.1 304 51.6
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 5.7e-82 308.9 412 43.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 9.6e-82 308.1 370 44.1
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 8.2e-81 305.1 214 65.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.4e-80 304.3 326 50.0
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-80 303.9 379 46.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.8e-80 303.9 298 52.0
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 2.4e-80 303.5 345 47.0
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.1e-80 303.1 297 51.5
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 4.1e-80 302.8 354 47.5
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 5.3e-80 302.4 330 48.5
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 5.3e-80 302.4 372 46.2
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.6e-79 300.1 379 46.2
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.4e-79 299.7 374 45.2
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 4.5e-79 299.3 283 53.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 5.9e-79 298.9 374 44.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 7.6e-79 298.5 365 47.1
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 7.6e-79 298.5 391 43.7
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.7e-78 297.4 362 46.4
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.7e-78 297.4 366 45.9
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.2e-78 297.0 370 45.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.2e-78 297.0 372 45.7
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.9e-78 296.6 388 44.3
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.9e-78 296.6 378 45.0
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.8e-78 296.2 386 44.3
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 6.5e-78 295.4 372 44.9
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.4e-77 294.3 384 44.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.2e-77 292.0 364 45.3
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 9.3e-77 291.6 374 44.4
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 9.3e-77 291.6 397 42.3
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.6e-76 289.7 361 45.7
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.6e-76 289.7 390 42.6
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.1e-75 285.8 270 54.8
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 6.7e-75 285.4 371 42.3
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 4.3e-74 282.7 214 59.3
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.7e-74 282.3 371 44.5
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.7e-74 282.3 395 42.0
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 9.7e-74 281.6 292 51.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.8e-73 280.0 372 43.8
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.8e-73 279.3 356 44.1
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 8.2e-73 278.5 410 41.5
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-72 278.1 350 45.4
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 5.3e-72 275.8 292 49.7
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 5.3e-72 275.8 292 49.7
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 5.3e-72 275.8 292 49.7
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.3e-72 275.8 292 49.7
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-71 274.6 292 49.3
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.5e-71 274.2 373 42.9
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.0e-71 273.9 226 55.3
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 3.4e-71 273.1 292 49.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 7.7e-71 271.9 373 42.4
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.3e-70 271.2 261 51.7
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 3.8e-70 269.6 373 42.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 5.0e-70 269.2 367 43.3
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 6.5e-70 268.9 367 43.3
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 8.5e-70 268.5 372 41.7
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.1e-69 268.1 295 47.8
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.9e-69 267.3 224 54.5
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.5e-69 266.9 255 51.8
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.2e-69 265.4 382 42.4
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-68 264.2 365 42.7
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 4.6e-68 262.7 392 39.8
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-67 261.2 382 41.9
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.3e-67 260.4 361 42.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 5.1e-67 259.2 365 41.4
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 6.7e-67 258.8 278 49.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.1e-66 258.1 461 34.9
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 6.9e-64 248.8 272 49.3
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.5e-63 247.7 367 41.4
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.5e-62 242.3 216 57.4
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.4e-59 234.6 371 38.0
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.0e-59 233.4 322 43.2
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 9.1e-56 221.9 180 57.2
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-55 221.1 257 47.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-53 214.9 295 44.4
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.8e-49 200.3 134 67.9
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 9.1e-48 195.3 348 36.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.8e-43 179.1 156 52.6
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-42 177.6 369 36.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 4.1e-40 169.9 289 38.8
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.7e-39 167.2 374 33.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.0e-36 155.6 190 40.0
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.0e-35 155.2 259 34.4
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 9.5e-29 132.1 95 62.1
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.9e-25 120.6 235 37.0
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.0e-22 109.8 69 68.1
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.2e-20 105.1 76 64.5
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 3.4e-18 97.1 194 40.2
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 4.0e-11 73.6 60 56.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.6e-07 61.6 55 52.7
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 4.6e-07 60.1 182 30.2
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.3e-06 58.5 45 55.6


User provided reference genes

Program Settings