Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 4.2e-223 777.7 389 100.0
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 4.5e-92 342.4 379 51.2
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.0e-91 341.3 386 48.4
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 4.2e-90 335.9 385 49.1
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.1e-89 333.6 394 49.2
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.3e-88 330.9 375 49.1
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.9e-88 329.3 396 48.0
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 8.7e-88 328.2 391 47.1
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.5e-87 327.4 374 48.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 5.7e-87 325.5 384 47.7
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.3e-86 324.3 391 47.1
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.1e-86 323.6 374 48.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 3.7e-86 322.8 378 49.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.7e-86 322.8 397 48.1
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.7e-86 322.8 388 46.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 4.8e-86 322.4 378 49.7
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.8e-86 322.4 391 46.8
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.8e-86 322.4 391 46.8
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 4.8e-86 322.4 378 49.2
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 6.2e-86 322.0 395 47.1
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.2e-86 321.6 374 48.7
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 8.2e-86 321.6 374 48.7
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 8.2e-86 321.6 375 49.3
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.2e-86 321.6 380 48.2
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.1e-85 321.2 385 48.6
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.1e-85 319.3 386 48.2
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 4.1e-85 319.3 384 47.9
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 4.1e-85 319.3 374 49.2
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.9e-85 318.5 393 47.6
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.9e-85 318.5 375 49.6
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 9.0e-85 318.2 374 47.6
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.5e-84 317.4 383 48.0
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.5e-84 317.4 401 46.1
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.5e-84 317.4 375 48.3
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.6e-84 316.6 393 46.6
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.4e-84 316.2 387 47.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 3.4e-84 316.2 392 45.2
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 3.4e-84 316.2 395 46.8
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 5.8e-84 315.5 385 47.0
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 5.8e-84 315.5 386 49.0
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.8e-84 315.5 374 47.9
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 7.6e-84 315.1 376 47.6
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.0e-83 314.7 374 47.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.0e-83 314.7 378 48.4
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-83 314.3 385 46.5
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-83 314.3 376 47.3
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.7e-83 313.9 379 49.1
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.7e-83 313.9 398 47.2
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 2.9e-83 313.2 392 47.2
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.8e-83 312.8 390 46.7
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 5.0e-83 312.4 392 46.2
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 6.5e-83 312.0 386 47.7
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 6.5e-83 312.0 377 48.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 8.4e-83 311.6 374 48.7
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.1e-82 311.2 375 49.3
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-82 311.2 375 47.2
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.4e-82 310.8 391 47.1
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.9e-82 310.5 375 46.7
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.5e-82 310.1 391 46.8
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.2e-82 309.7 393 46.8
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 4.2e-82 309.3 397 47.4
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.5e-82 308.9 376 47.9
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 5.5e-82 308.9 383 48.0
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 7.1e-82 308.5 376 47.9
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 9.3e-82 308.1 387 46.0
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 4.6e-81 305.8 391 46.8
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 4.6e-81 305.8 376 46.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 7.9e-81 305.1 386 46.1
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.0e-80 304.7 375 46.4
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.0e-80 304.7 375 45.3
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.0e-80 304.7 376 46.3
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.8e-80 303.9 384 47.9
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 5.1e-80 302.4 377 47.5
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 6.7e-80 302.0 374 47.9
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 6.7e-80 302.0 384 46.4
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 6.7e-80 302.0 392 46.2
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 6.7e-80 302.0 392 47.2
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.5e-79 300.8 397 45.6
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.9e-79 300.4 391 45.8
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.5e-79 300.1 375 44.8
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.3e-79 299.7 390 47.7
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.3e-79 299.7 383 46.0
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 5.7e-79 298.9 379 47.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 7.4e-79 298.5 377 46.9
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 7.4e-79 298.5 377 46.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.6e-78 297.4 375 46.1
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.7e-78 296.2 383 46.5
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.7e-78 296.2 377 46.4
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 6.3e-78 295.4 391 45.8
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 8.2e-78 295.0 378 47.4
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 8.2e-78 295.0 383 47.3
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-77 294.3 383 45.7
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.8e-77 293.9 377 46.2
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.1e-77 292.7 384 46.6
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.1e-77 292.7 384 46.6
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 5.3e-77 292.4 372 46.2
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 6.9e-77 292.0 373 46.1
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 6.9e-77 292.0 384 46.9
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.2e-76 291.2 360 49.2
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-76 291.2 387 44.2
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-76 290.8 383 43.6
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.4e-76 289.7 389 43.7
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 4.5e-76 289.3 391 44.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.3e-75 287.7 396 44.4
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.7e-75 287.3 390 43.1
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.8e-75 286.2 392 44.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 6.5e-75 285.4 366 46.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 3.2e-74 283.1 375 45.9
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 9.4e-74 281.6 375 45.3
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.6e-73 279.3 383 45.2
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 4.6e-73 279.3 376 42.8
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 4.6e-73 279.3 391 43.0
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 6.1e-73 278.9 375 44.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 7.9e-73 278.5 383 43.9
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 7.9e-73 278.5 375 44.3
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.8e-72 277.3 376 46.0
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 2.3e-72 276.9 389 45.0
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 9.7e-71 271.6 400 43.0
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.8e-70 270.0 391 43.5
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 3.7e-70 269.6 378 42.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 4.1e-69 266.2 385 41.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 5.3e-69 265.8 361 45.7
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-68 264.6 391 43.2
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.5e-68 262.7 379 43.8
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 2.2e-67 260.4 361 43.5
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-66 257.7 392 42.9
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.5e-66 256.9 348 45.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 3.2e-66 256.5 526 37.3
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.7e-65 253.4 348 44.3
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 7.9e-65 251.9 365 44.4
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 7.4e-63 245.4 401 42.1
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 9.7e-63 245.0 417 39.3
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.3e-62 244.6 350 44.0
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.3e-59 234.6 175 60.6
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.7e-59 234.2 420 39.5
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-56 224.9 385 38.2
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 5.2e-56 222.6 290 41.7
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.6e-55 220.3 428 39.7
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 5.3e-53 212.6 413 39.2
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.6e-52 211.1 393 39.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.0e-51 208.4 181 50.8
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-51 208.0 340 42.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 8.5e-51 205.3 164 56.7
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.8e-38 163.7 133 54.1
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 5.4e-37 159.5 341 36.7
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.0e-32 143.3 387 33.3
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 9.2e-29 132.1 370 31.1
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.7e-28 130.6 88 62.5
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 6.8e-24 115.9 122 46.7
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 5.8e-23 112.8 296 34.5
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 5.8e-23 112.8 296 34.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 6.4e-22 109.4 241 37.8
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.1e-21 108.6 197 42.6
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.4e-21 107.5 133 49.6
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.6e-20 104.8 135 48.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.6e-20 104.8 194 39.7
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.6e-20 103.2 226 35.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 6.0e-20 102.8 75 62.7
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.6e-09 67.0 68 58.8
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.5e-07 61.6 33 72.7
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 6.4e-06 56.2 84 42.9


User provided reference genes

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