Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 3712.9 1876 100.0
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1661.0 1853 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1655.6 1885 49.0
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1624.0 1946 47.2
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1584.3 1882 46.6
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 1386.7 1872 41.0
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 1384.8 1868 40.9
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 1380.5 1872 41.8
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 1366.7 1873 40.5
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 1365.9 1880 40.7
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1361.3 1876 40.5
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 1359.0 1886 40.6
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 1354.7 1871 40.6
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 1354.0 1885 40.1
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 1352.0 1880 40.7
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1348.6 1880 41.0
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 1347.0 1877 39.9
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 1347.0 1871 40.6
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 1346.6 1882 40.3
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 1345.9 1870 40.2
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 1345.9 1876 40.0
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1345.1 1875 40.5
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 1343.6 1876 40.1
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 1342.4 1878 40.5
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1341.3 1882 40.2
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 1341.3 1873 40.0
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1340.5 1879 39.6
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 1339.3 1878 39.6
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 1339.3 1873 40.2
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1336.6 1876 40.4
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 1336.6 1875 39.8
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1336.2 1883 40.2
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 1335.9 1874 39.5
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 1335.9 1880 40.1
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1334.3 1876 39.8
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1333.5 1876 40.2
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1333.2 1890 39.9
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 1333.2 1875 39.9
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 1332.4 1877 40.0
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1331.6 1877 40.6
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 1330.9 1872 39.7
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1330.5 1875 40.4
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1330.1 1876 39.7
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 1329.3 1882 40.5
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1329.3 1875 40.4
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 1328.9 1879 39.8
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1328.2 1879 39.8
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1328.2 1878 39.7
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 1327.8 1874 39.5
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 1326.6 1876 39.6
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 1326.6 1866 40.1
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 1326.6 1895 39.8
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 1325.5 1879 40.1
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1325.1 1874 40.1
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1323.1 1878 40.0
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 1322.4 1875 40.0
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1320.4 1870 39.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 1317.4 1872 39.7
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1315.4 1830 40.6
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1315.4 1891 40.9
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 1314.3 1826 40.4
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 1312.0 1869 39.2
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 1311.6 1880 39.4
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1309.7 1908 39.4
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1309.3 1879 39.5
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 1308.5 1895 39.6
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1308.5 1879 39.8
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 1308.5 1877 39.5
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 1307.7 1876 39.4
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1307.4 1876 39.6
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 1302.0 1877 39.4
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1300.8 1873 39.5
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 1300.0 1877 39.5
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1297.0 1908 39.2
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 1289.2 1885 39.0
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1289.2 1866 39.6
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 1284.6 1983 37.7
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1284.2 1955 38.3
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1284.2 1872 38.7
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 1279.6 1821 39.7
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1277.7 1877 39.2
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 1271.5 1954 38.3
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1270.8 1819 39.7
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 1267.7 2033 36.8
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1266.9 1889 38.7
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1266.1 1863 39.3
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 1266.1 1881 39.3
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 1263.1 1881 38.8
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 1259.2 1883 38.5
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 1255.7 1847 38.9
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 1247.6 1869 38.5
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 1247.3 1812 39.6
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1241.1 1856 39.8
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1240.3 1860 38.8
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1238.8 1736 40.6
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 1231.5 1874 38.3
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 1231.1 1897 37.7
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1228.8 1899 37.8
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1228.8 1870 38.5
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1214.5 1964 37.1
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 1206.4 1891 37.9
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 1191.0 1674 40.9
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1179.5 1733 39.3
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1118.6 1706 39.0
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 0.0e+00 1107.0 1976 36.5
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1095.5 1613 39.4
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-304 1050.8 1476 39.8
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.8e-301 1039.6 1585 38.2
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 5.7e-294 1015.4 1494 39.0
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 4.1e-276 956.1 1782 34.8
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 6.2e-248 862.4 1181 40.5
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 3.1e-247 860.1 1874 31.5
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 2.3e-234 817.4 1265 37.5
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 5.5e-204 716.5 972 40.7
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 9.8e-177 625.9 893 39.8
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.8e-146 525.4 739 40.2
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 4.9e-144 517.3 714 39.8
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 5.1e-133 480.7 710 40.4
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 8.1e-131 473.4 1906 25.0
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.0e-109 403.3 523 41.1
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.6e-105 388.7 476 44.3
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.3e-99 369.8 1188 27.0
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 1.7e-96 359.4 1706 25.2
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 9.4e-87 327.0 456 41.0
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.1e-74 285.0 638 32.6
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 7.5e-60 237.7 314 45.5
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.0e-56 227.3 357 39.8
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.5e-55 223.4 235 43.4
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.6e-52 212.6 209 46.4
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 3.5e-49 202.2 656 28.5
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 1.9e-47 196.4 311 37.0
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 6.4e-43 181.4 2036 20.4
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.4e-42 180.3 263 42.2
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.8e-42 179.9 167 46.1
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 1.8e-42 179.9 264 36.4
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.3e-40 172.9 244 37.3
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 3.1e-37 162.5 650 25.4
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.1e-30 139.8 142 52.1
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 4.1e-26 125.6 98 58.2
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 2.0e-20 106.7 348 28.2
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.7e-11 77.0 205 29.8
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.9e-10 73.6 74 37.8
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 9.6e-07 61.2 73 41.1


User provided reference genes

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