Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 3.1e-302 1041.2 593 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.0e-119 434.9 432 65.3
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.2e-118 428.7 418 66.3
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 4.7e-117 426.0 576 58.0
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 9.8e-115 418.3 389 62.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.4e-113 414.5 389 66.6
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.4e-113 414.5 398 65.3
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 5.4e-113 412.5 396 66.7
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.6e-112 411.0 389 61.7
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.6e-112 411.0 422 63.3
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 2.7e-112 410.2 435 61.6
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 7.7e-112 408.7 427 58.5
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.0e-111 408.3 403 65.8
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 6.6e-111 405.6 389 62.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.9e-110 404.1 435 54.9
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.9e-110 404.1 435 61.6
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 2.5e-110 403.7 389 65.8
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.5e-110 403.7 389 66.3
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 4.2e-110 402.9 435 61.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 7.2e-110 402.1 495 58.2
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 9.5e-110 401.7 482 56.4
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 9.5e-110 401.7 488 58.2
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 9.5e-110 401.7 394 66.2
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.2e-109 401.4 389 59.6
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.6e-109 401.0 391 60.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.6e-109 401.0 386 67.1
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.6e-109 401.0 389 63.8
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.1e-109 400.6 476 58.2
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.1e-109 400.6 415 57.3
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.8e-109 400.2 435 61.1
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.6e-109 399.8 389 66.1
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 4.7e-109 399.4 389 58.1
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 6.1e-109 399.1 389 62.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 6.1e-109 399.1 389 65.6
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.1e-109 399.1 388 63.7
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.0e-109 398.7 396 51.8
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.0e-109 398.7 389 66.1
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 1.0e-108 398.3 389 58.1
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.4e-108 397.9 389 64.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.8e-108 397.5 390 63.6
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.3e-108 397.1 389 59.1
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 2.3e-108 397.1 389 63.5
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 3.0e-108 396.7 389 59.1
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.0e-108 396.4 422 61.8
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 5.2e-108 396.0 426 55.9
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.2e-107 394.8 389 58.4
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-107 394.4 389 65.6
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-107 394.0 389 65.3
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.6e-107 393.7 435 60.7
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.6e-107 393.7 477 57.4
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.4e-107 393.3 390 63.1
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 4.4e-107 392.9 382 64.4
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.4e-107 392.9 393 59.0
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 4.4e-107 392.9 388 65.7
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 9.8e-107 391.7 390 58.2
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 9.8e-107 391.7 389 58.1
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 9.8e-107 391.7 389 64.8
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.3e-106 391.3 389 65.0
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.3e-106 391.3 389 65.0
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.3e-106 391.3 396 64.1
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.3e-106 391.3 386 66.3
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.3e-106 391.3 389 64.3
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.3e-106 391.3 404 57.4
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.2e-106 390.6 486 55.3
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.2e-106 390.6 402 58.0
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 2.8e-106 390.2 390 57.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.8e-106 390.2 389 59.6
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 4.9e-106 389.4 536 51.9
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 6.3e-106 389.0 384 65.6
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 6.3e-106 389.0 384 65.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 6.3e-106 389.0 384 65.6
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.1e-105 388.3 565 50.8
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.8e-105 387.5 489 49.9
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 2.4e-105 387.1 483 56.9
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.4e-105 387.1 537 48.4
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.4e-105 387.1 531 48.6
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.4e-105 387.1 458 53.7
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 3.1e-105 386.7 485 57.7
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 4.1e-105 386.3 389 58.1
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 5.4e-105 386.0 440 54.3
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 7.0e-105 385.6 389 57.8
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 3.5e-104 383.3 541 52.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.5e-104 382.9 421 55.1
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 5.9e-104 382.5 575 49.9
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.0e-103 381.7 402 58.7
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.3e-103 381.3 376 66.0
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.7e-103 380.9 563 43.2
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.7e-103 380.9 491 45.6
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.9e-103 380.2 426 61.0
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 3.8e-103 379.8 432 59.5
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 8.6e-103 378.6 575 49.4
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 3.3e-102 376.7 405 56.3
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 5.6e-102 375.9 566 51.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 9.5e-102 375.2 480 50.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 9.5e-102 375.2 365 56.4
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.3e-100 370.5 393 62.6
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 3.1e-100 370.2 419 62.5
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 3.1e-100 370.2 479 52.2
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-99 368.2 397 62.0
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-99 368.2 397 61.7
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 3.4e-99 366.7 427 52.9
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 8.3e-98 362.1 389 62.0
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.1e-97 361.7 448 56.7
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.4e-97 361.3 596 39.9
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.0e-97 359.0 414 59.2
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 4.3e-94 349.7 364 57.1
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.1e-92 345.1 288 62.2
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.4e-92 344.7 480 49.2
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.0e-92 343.2 392 60.2
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 6.8e-92 342.4 390 53.3
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 9.8e-91 338.6 481 53.0
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.9e-90 337.0 393 51.1
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 3.7e-90 336.7 389 58.6
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 2.1e-88 330.9 458 53.1
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 7.8e-88 328.9 415 53.0
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.9e-86 324.3 389 59.1
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.1e-84 317.0 381 60.1
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 6.8e-84 315.8 376 60.9
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 6.8e-84 315.8 339 56.0
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.2e-83 315.1 389 57.8
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 5.8e-83 312.8 413 56.9
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 8.3e-82 308.9 498 43.2
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 9.2e-81 305.4 301 70.4
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 3.6e-77 293.5 347 62.8
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.7e-71 274.6 282 61.3
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 7.3e-70 269.2 470 38.5
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.4e-67 260.0 249 76.3
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.3e-66 258.5 606 37.5
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.6e-61 241.5 269 69.5
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.8e-61 240.7 262 51.9
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 5.8e-59 233.0 252 50.4
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 8.2e-45 186.0 135 68.9
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.1e-40 169.9 161 51.6
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-35 154.8 151 50.3
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.6e-35 154.5 150 50.7
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-34 151.4 150 49.3
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 6.5e-34 149.8 188 46.3
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.2e-32 145.6 497 28.6
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.7e-31 139.8 177 43.5
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.7e-31 139.8 95 71.6
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-30 138.3 163 44.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.3e-30 137.1 143 48.3
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-27 129.0 137 48.2
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.4e-25 119.4 103 54.4
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-24 116.7 171 38.6
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.1e-22 112.5 210 34.3
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-19 102.1 75 60.0
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 7.4e-14 83.2 88 45.5
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.8e-12 78.6 52 69.2
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.0e-11 75.1 49 69.4
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.2e-08 65.9 71 53.5
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.1e-08 63.5 52 63.5
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 5.2e-07 60.5 55 58.2


User provided reference genes

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