Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 5.6e-98 360.9 179 100.0
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-53 213.8 175 56.0
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 4.2e-53 211.8 168 58.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 5.5e-53 211.5 178 57.9
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.6e-52 209.9 178 56.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 2.7e-52 209.1 178 55.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 4.6e-52 208.4 183 55.2
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 4.6e-52 208.4 175 54.9
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 7.9e-52 207.6 175 54.9
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.8e-51 206.5 175 55.4
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.3e-51 206.1 175 54.9
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.3e-51 206.1 168 55.4
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 3.0e-51 205.7 179 54.2
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 3.9e-51 205.3 175 54.9
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.9e-51 205.3 167 56.3
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 3.9e-51 205.3 172 54.1
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 5.1e-51 204.9 177 53.1
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 5.1e-51 204.9 179 54.2
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 5.1e-51 204.9 179 53.6
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 5.1e-51 204.9 179 53.6
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 6.7e-51 204.5 176 53.4
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 6.7e-51 204.5 175 53.7
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 8.7e-51 204.1 180 53.9
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 8.7e-51 204.1 155 60.0
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.1e-50 203.8 179 52.5
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.9e-50 203.0 171 56.1
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.9e-50 203.0 171 56.1
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.9e-50 203.0 176 53.4
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 2.5e-50 202.6 175 53.1
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.5e-50 202.6 178 52.8
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 2.5e-50 202.6 176 53.4
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 3.3e-50 202.2 161 57.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 3.3e-50 202.2 161 57.8
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 3.3e-50 202.2 161 57.8
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 4.3e-50 201.8 175 54.9
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 5.7e-50 201.4 177 52.5
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 5.7e-50 201.4 161 56.5
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 5.7e-50 201.4 175 52.0
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 5.7e-50 201.4 176 53.4
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 5.7e-50 201.4 176 54.5
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.4e-50 201.1 175 53.7
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.4e-50 201.1 175 53.7
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.4e-50 201.1 161 57.1
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.3e-49 200.3 175 53.7
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.3e-49 200.3 181 53.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.6e-49 199.9 168 56.0
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.2e-49 199.5 167 55.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.2e-49 199.5 173 54.3
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 2.2e-49 199.5 168 56.0
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.8e-49 199.1 166 56.6
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 2.8e-49 199.1 166 56.6
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.8e-49 199.1 161 56.5
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.8e-49 199.1 161 56.5
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.8e-49 199.1 166 56.6
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.8e-49 199.1 178 52.8
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 3.7e-49 198.7 168 55.4
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 3.7e-49 198.7 175 52.6
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 3.7e-49 198.7 157 56.1
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 3.7e-49 198.7 161 54.7
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.7e-49 198.7 177 52.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 4.8e-49 198.4 176 51.1
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 4.8e-49 198.4 181 50.3
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 4.8e-49 198.4 175 50.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 6.3e-49 198.0 167 55.1
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 6.3e-49 198.0 158 55.1
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 6.3e-49 198.0 161 54.7
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 8.2e-49 197.6 175 52.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.4e-48 196.8 161 54.0
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.4e-48 196.8 161 54.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.4e-48 196.8 155 57.4
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.8e-48 196.4 158 55.1
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.8e-48 196.4 158 55.1
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-48 196.4 175 50.9
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.8e-48 196.4 161 54.0
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.8e-48 196.4 179 50.8
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 2.4e-48 196.1 161 54.7
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 4.1e-48 195.3 172 52.3
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 4.1e-48 195.3 154 55.8
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 5.3e-48 194.9 158 57.6
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.3e-48 194.9 175 51.4
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.9e-48 194.5 175 51.4
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 9.0e-48 194.1 179 50.3
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.0e-47 193.0 160 53.1
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.6e-47 192.6 167 53.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 2.6e-47 192.6 158 55.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 3.4e-47 192.2 158 56.3
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 4.5e-47 191.8 158 56.3
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 4.5e-47 191.8 155 56.8
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 5.9e-47 191.4 198 49.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.0e-46 190.7 174 52.3
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-46 190.3 178 48.3
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.2e-46 189.5 167 51.5
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.9e-46 189.1 155 56.1
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.5e-46 188.0 145 59.3
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 6.5e-46 188.0 158 55.1
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 6.5e-46 188.0 159 52.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.1e-45 187.2 158 55.1
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-45 187.2 175 48.0
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.4e-45 186.8 145 59.3
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.9e-45 186.4 158 53.2
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 5.5e-45 184.9 161 52.2
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 9.4e-45 184.1 153 56.2
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 1.2e-44 183.7 176 51.1
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-44 183.7 144 57.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.2e-44 183.7 145 57.9
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.6e-44 183.3 162 54.3
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 6.1e-44 181.4 170 51.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.0e-43 180.6 142 57.0
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.8e-43 179.9 146 56.8
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.3e-43 179.5 172 50.0
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 3.9e-43 178.7 137 59.1
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 3.9e-43 178.7 145 55.9
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.1e-43 178.3 174 48.9
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 6.7e-43 177.9 155 52.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.0e-42 176.4 137 59.1
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 3.3e-42 175.6 138 58.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 4.3e-42 175.3 151 51.0
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-40 170.2 167 48.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.1e-34 150.6 175 45.1
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.3e-33 144.8 154 47.4
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.8e-32 143.3 160 44.4
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.8e-32 143.3 135 51.1
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.0e-30 137.5 117 53.0
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 2.9e-30 136.0 111 55.0
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-29 133.3 122 49.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 6.1e-28 128.3 113 52.2
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 6.1e-28 128.3 140 45.0
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.8e-27 126.7 117 50.4
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.8e-27 126.7 102 56.9
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.1e-24 117.5 125 48.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.8e-24 116.7 99 53.5
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.3e-22 110.5 113 46.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-21 107.5 77 59.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.7e-20 102.8 127 40.2
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.6e-20 102.4 77 57.1
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.5e-18 97.1 187 33.2
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.4e-18 95.5 68 60.3
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.4e-18 95.5 77 55.8
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-17 93.6 74 54.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.4e-16 89.7 89 47.2
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.0e-16 88.2 145 35.2
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.5e-15 85.9 80 51.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.6e-12 77.0 66 54.5
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.3e-11 73.2 51 62.7
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.2e-11 72.0 74 45.9
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 6.8e-11 71.6 117 36.8
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 2.6e-10 69.7 63 47.6
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 4.9e-09 65.5 58 48.3


User provided reference genes

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