Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 8.0e-86 320.5 171 100.0
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 2.8e-46 189.1 153 62.7
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 2.8e-46 189.1 132 69.7
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 1.8e-45 186.4 174 55.2
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 1.3e-43 180.3 145 60.7
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 7.1e-42 174.5 122 62.3
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 2.8e-38 162.5 117 62.4
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 6.9e-37 157.9 116 62.9
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.5e-36 156.8 122 57.4
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 5.8e-36 154.8 122 57.4
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 1.3e-35 153.7 113 59.3
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.2e-35 152.9 116 59.5
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 8.4e-35 151.0 116 58.6
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 1.4e-34 150.2 116 57.8
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 2.4e-34 149.4 117 56.4
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 3.2e-34 149.1 116 57.8
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 4.2e-34 148.7 116 56.9
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 4.2e-34 148.7 116 61.2
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 4.2e-34 148.7 116 61.2
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 4.2e-34 148.7 121 53.7
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 4.2e-34 148.7 116 56.9
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 5.4e-34 148.3 116 55.2
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 7.1e-34 147.9 116 55.2
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 7.1e-34 147.9 117 57.3
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 9.3e-34 147.5 117 55.6
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 9.3e-34 147.5 116 55.2
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 9.3e-34 147.5 114 57.0
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 9.3e-34 147.5 117 58.1
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.2e-33 147.1 113 56.6
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 1.6e-33 146.7 124 56.5
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.6e-33 146.7 116 56.9
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.6e-33 146.7 116 56.9
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.6e-33 146.7 116 56.9
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 1.6e-33 146.7 116 56.0
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 2.1e-33 146.4 116 54.3
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 2.1e-33 146.4 116 56.9
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 2.1e-33 146.4 117 55.6
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 2.7e-33 146.0 121 52.1
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 3.5e-33 145.6 121 52.9
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 7.8e-33 144.4 116 55.2
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 7.8e-33 144.4 117 54.7
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 1.3e-32 143.7 116 56.0
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 1.3e-32 143.7 117 55.6
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.3e-32 143.7 116 54.3
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 1.3e-32 143.7 117 53.0
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 1.3e-32 143.7 119 57.1
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 1.7e-32 143.3 120 51.7
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.7e-32 143.3 121 51.2
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 1.7e-32 143.3 112 57.1
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 1.7e-32 143.3 116 55.2
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 2.3e-32 142.9 116 56.0
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 2.3e-32 142.9 117 53.0
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 3.0e-32 142.5 120 51.7
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 3.0e-32 142.5 121 53.7
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 3.0e-32 142.5 119 51.3
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 3.9e-32 142.1 117 53.0
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 3.9e-32 142.1 108 58.3
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 3.9e-32 142.1 117 53.8
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 3.9e-32 142.1 125 53.6
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 3.9e-32 142.1 125 53.6
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 5.1e-32 141.7 116 53.4
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 5.1e-32 141.7 116 54.3
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 5.1e-32 141.7 116 51.7
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 5.1e-32 141.7 125 53.6
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 6.6e-32 141.4 117 53.0
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 6.6e-32 141.4 116 55.2
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 8.7e-32 141.0 116 53.4
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 8.7e-32 141.0 113 55.8
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 8.7e-32 141.0 117 53.0
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 8.7e-32 141.0 124 51.6
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 8.7e-32 141.0 117 58.1
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 1.1e-31 140.6 114 56.1
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 1.1e-31 140.6 116 52.6
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 1.1e-31 140.6 116 52.6
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 1.5e-31 140.2 116 53.4
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 1.9e-31 139.8 114 57.0
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 1.9e-31 139.8 114 54.4
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 1.9e-31 139.8 114 54.4
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.9e-31 139.8 127 48.8
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 2.5e-31 139.4 117 53.0
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 2.5e-31 139.4 117 54.7
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 4.3e-31 138.7 115 52.2
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 5.6e-31 138.3 116 53.4
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 7.3e-31 137.9 116 54.3
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 1.6e-30 136.7 117 53.0
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 1.6e-30 136.7 114 54.4
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 2.1e-30 136.3 119 52.1
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 2.1e-30 136.3 116 51.7
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 2.1e-30 136.3 117 52.1
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.8e-30 136.0 116 50.9
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 4.8e-30 135.2 117 53.8
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 6.2e-30 134.8 114 53.5
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 6.2e-30 134.8 114 52.6
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 6.2e-30 134.8 144 49.3
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 6.2e-30 134.8 114 53.5
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 6.2e-30 134.8 115 50.4
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 8.1e-30 134.4 116 53.4
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 8.1e-30 134.4 114 53.5
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 1.1e-29 134.0 116 53.4
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 1.8e-29 133.3 116 50.9
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 2.4e-29 132.9 115 52.2
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 2.4e-29 132.9 115 53.0
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 2.4e-29 132.9 115 52.2
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 3.1e-29 132.5 114 52.6
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 4.0e-29 132.1 114 52.6
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 4.0e-29 132.1 114 52.6
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 5.3e-29 131.7 110 53.6
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 5.3e-29 131.7 110 54.5
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 6.9e-29 131.3 116 48.3
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 6.9e-29 131.3 116 48.3
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 9.0e-29 131.0 115 53.0
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 2.6e-28 129.4 105 56.2
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 2.6e-28 129.4 116 49.1
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 3.4e-28 129.0 87 67.8
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 4.5e-28 128.6 88 60.2
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 5.8e-28 128.3 127 49.6
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 2.2e-27 126.3 87 66.7
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 8.4e-27 124.4 108 51.9
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 1.9e-26 123.2 122 48.4
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 2.4e-26 122.9 90 62.2
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.1e-22 109.8 97 51.5
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.8e-21 106.7 67 64.2
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 2.4e-21 106.3 116 40.5
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 2.6e-20 102.8 69 62.3
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 5.8e-20 101.7 94 48.9
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 1.7e-19 100.1 116 40.5
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 6.5e-19 98.2 88 48.9
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 1.8e-16 90.1 62 62.9
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.5e-12 77.0 53 60.4
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 2.9e-11 72.8 71 45.1
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 3.9e-08 62.4 53 56.6
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 1.3e-06 57.4 38 63.2


User provided reference genes

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