Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 0.0e+00 2614.7 1420 100.0
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 8.5e-133 479.6 477 54.3
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.5e-113 415.6 427 55.3
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 4.4e-113 414.1 432 55.3
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 2.9e-112 411.4 507 49.3
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 4.9e-112 410.6 474 51.9
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.4e-111 409.1 433 54.5
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 1.9e-111 408.7 442 52.7
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 2.4e-111 408.3 412 55.3
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 2.4e-111 408.3 509 48.5
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 4.1e-111 407.5 466 51.7
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 7.0e-111 406.8 410 54.9
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 9.2e-111 406.4 445 52.4
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 2.7e-110 404.8 423 55.1
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 4.6e-110 404.1 439 53.8
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.0e-109 402.9 415 55.2
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 1.3e-109 402.5 414 53.4
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 3.0e-109 401.4 446 52.5
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 5.0e-109 400.6 520 48.7
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 5.0e-109 400.6 495 48.9
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 6.6e-109 400.2 406 55.4
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 8.6e-109 399.8 416 54.6
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 1.1e-108 399.4 476 51.3
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 1.5e-108 399.1 483 50.5
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.9e-108 398.7 431 54.1
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 2.5e-108 398.3 497 49.1
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 4.3e-108 397.5 413 54.7
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 7.3e-108 396.7 410 54.1
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 7.3e-108 396.7 406 54.7
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.2e-107 396.0 506 48.6
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 2.1e-107 395.2 458 51.7
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 2.8e-107 394.8 414 53.4
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 6.2e-107 393.7 413 55.0
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 1.1e-106 392.9 453 51.9
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.1e-106 392.9 502 49.0
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 1.8e-106 392.1 421 52.5
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 6.8e-106 390.2 498 48.8
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 6.8e-106 390.2 410 53.9
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 6.8e-106 390.2 429 52.2
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 1.5e-105 389.0 428 51.9
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 2.0e-105 388.7 569 44.8
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 3.4e-105 387.9 411 52.1
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 3.4e-105 387.9 467 49.3
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 5.8e-105 387.1 407 54.8
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 7.5e-105 386.7 432 50.5
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 1.3e-104 386.0 425 52.9
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 2.9e-104 384.8 419 52.0
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 6.4e-104 383.6 407 53.1
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 1.4e-103 382.5 503 48.5
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 4.1e-103 380.9 422 51.2
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 7.1e-103 380.2 426 50.9
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.2e-102 379.4 519 45.7
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.2e-102 379.4 479 49.3
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 2.1e-102 378.6 419 53.5
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.5e-102 377.9 465 49.5
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 4.6e-102 377.5 421 51.5
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 1.3e-101 375.9 548 44.5
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 1.7e-101 375.6 494 47.0
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 3.0e-101 374.8 403 52.6
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 6.6e-101 373.6 417 51.1
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 8.6e-101 373.2 456 49.3
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 1.5e-100 372.5 510 46.9
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 1.5e-100 372.5 515 46.0
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 1.9e-100 372.1 425 49.9
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 1.9e-100 372.1 512 46.1
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 9.5e-100 369.8 507 46.4
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 2.1e-99 368.6 423 50.4
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 2.8e-99 368.2 402 53.5
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 3.6e-99 367.9 412 50.2
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 4.7e-99 367.5 414 52.4
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 5.2e-98 364.0 382 54.7
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 5.2e-98 364.0 513 45.6
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 6.8e-98 363.6 490 45.7
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 2.6e-97 361.7 473 46.3
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 5.8e-97 360.5 499 45.9
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 9.9e-97 359.8 454 47.4
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 2.9e-96 358.2 396 52.5
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 6.4e-96 357.1 610 41.5
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 1.9e-95 355.5 411 51.1
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 1.9e-95 355.5 399 51.1
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 2.4e-95 355.1 504 44.2
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 4.1e-95 354.4 402 51.2
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 9.2e-95 353.2 400 51.8
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 1.6e-94 352.4 399 50.9
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 2.1e-94 352.1 416 51.2
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 2.7e-94 351.7 368 53.5
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 2.7e-94 351.7 497 45.7
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 4.6e-94 350.9 405 50.9
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 6.0e-94 350.5 401 51.6
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 2.5e-92 345.1 434 48.6
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 2.8e-91 341.7 409 48.4
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 5.2e-90 337.4 518 42.1
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 1.5e-89 335.9 387 51.9
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 2.6e-89 335.1 442 47.5
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 8.4e-88 330.1 427 46.4
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 5.4e-87 327.4 479 44.7
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 1.3e-85 322.8 416 46.9
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 3.9e-85 321.2 416 47.1
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 6.6e-85 320.5 418 48.3
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 3.8e-80 304.7 247 62.8
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 7.9e-78 297.0 241 64.3
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 4.8e-75 287.7 198 70.2
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 2.7e-54 218.8 195 61.0
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 1.8e-50 206.1 300 45.3
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 1.8e-45 189.5 301 43.5
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.1e-34 153.7 204 39.7
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 7.0e-34 151.0 106 69.8
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.2e-30 140.2 180 46.1
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 3.4e-20 105.5 82 58.5
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 5.9e-17 94.7 108 49.1
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 8.3e-11 74.3 80 47.5
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 2.5e-07 62.8 90 40.0
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 7.3e-07 61.2 76 44.7


User provided reference genes

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