Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 5.1e-257 890.6 451 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.8e-159 565.5 396 68.9
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 2.3e-148 529.6 395 62.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 5.1e-148 528.5 396 63.6
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 8.7e-148 527.7 393 64.9
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.5e-147 526.9 420 61.4
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.5e-147 526.2 411 62.3
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 9.6e-147 524.2 429 59.2
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.6e-146 523.5 415 60.0
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 6.2e-146 521.5 401 62.6
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-145 520.0 396 62.6
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.8e-145 520.0 396 63.4
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.8e-145 520.0 395 61.5
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.1e-145 519.2 410 60.5
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 3.1e-145 519.2 411 62.3
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 3.1e-145 519.2 394 63.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.1e-145 519.2 419 60.6
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 4.0e-145 518.8 396 62.1
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 6.9e-145 518.1 396 62.4
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 6.9e-145 518.1 396 61.9
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.5e-144 516.9 440 57.7
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.0e-144 516.5 400 62.0
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.4e-144 515.8 429 59.0
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.4e-144 515.8 420 59.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 7.6e-144 514.6 413 60.0
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 9.9e-144 514.2 395 61.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.3e-143 513.8 394 62.9
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.3e-143 513.8 395 61.8
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.3e-143 513.8 396 60.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.3e-143 513.8 395 61.8
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.7e-143 513.5 398 61.3
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.9e-143 512.7 400 61.8
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.9e-143 512.7 413 59.8
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 3.8e-143 512.3 394 64.0
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 3.8e-143 512.3 391 61.1
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 4.9e-143 511.9 416 61.1
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 4.9e-143 511.9 409 61.1
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 6.4e-143 511.5 418 58.9
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 8.4e-143 511.1 416 61.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 8.4e-143 511.1 440 59.8
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.1e-142 510.8 396 60.9
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.4e-142 510.4 421 61.5
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.9e-142 510.0 418 60.8
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.9e-142 510.0 395 61.5
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.4e-142 509.6 396 60.9
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.4e-142 509.6 398 62.3
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 3.2e-142 509.2 395 62.0
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 4.2e-142 508.8 416 60.3
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 9.3e-142 507.7 456 56.6
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.2e-141 507.3 394 62.2
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.6e-141 506.9 421 58.7
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.6e-141 506.9 391 61.1
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 2.1e-141 506.5 420 59.3
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.1e-141 506.5 420 59.3
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 2.1e-141 506.5 409 60.9
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.7e-141 506.1 390 61.5
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.5e-141 505.8 396 60.6
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 6.0e-141 505.0 395 60.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 6.0e-141 505.0 395 60.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.9e-141 504.6 420 59.0
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.0e-140 504.2 398 60.8
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.3e-140 503.1 429 58.3
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.0e-140 502.7 436 56.9
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 3.0e-140 502.7 393 60.3
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 8.7e-140 501.1 434 56.9
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.5e-139 499.6 388 60.3
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 5.6e-139 498.4 396 61.1
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.4e-139 498.0 391 61.9
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-138 496.9 420 58.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.8e-138 496.1 393 60.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 4.8e-138 495.4 421 60.6
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 8.2e-138 494.6 408 60.3
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 8.2e-138 494.6 391 60.9
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.4e-137 493.8 421 60.3
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.8e-137 493.4 467 55.0
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.4e-137 493.0 421 60.6
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.4e-137 493.0 421 60.6
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 2.4e-137 493.0 393 62.1
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 6.9e-137 491.5 398 58.8
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.5e-136 490.3 393 60.1
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.4e-136 489.2 378 62.2
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 5.8e-136 488.4 415 57.6
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.9e-134 483.4 396 61.9
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 4.2e-134 482.3 396 60.6
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.2e-130 468.0 396 56.6
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.8e-129 466.8 356 64.3
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.0e-128 463.4 375 61.3
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.3e-127 460.7 356 63.5
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.7e-127 460.3 395 58.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 7.2e-126 454.9 351 62.1
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.9e-124 449.1 345 59.7
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 2.0e-123 446.8 378 56.3
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.7e-122 443.7 429 53.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.7e-122 442.6 333 62.5
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.1e-121 441.0 566 43.8
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 4.5e-120 435.6 404 53.5
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.9e-118 430.3 382 56.5
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 2.5e-118 429.9 377 55.4
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.2e-118 428.3 348 60.3
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.6e-117 426.0 331 60.1
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.1e-115 421.0 395 54.2
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 9.7e-115 417.9 395 52.9
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.5e-112 410.6 321 64.8
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 7.7e-104 381.7 301 60.8
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 7.7e-104 381.7 335 56.1
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 3.3e-99 366.3 405 47.2
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 5.7e-99 365.5 375 51.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.1e-97 359.8 330 57.0
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 5.7e-91 339.0 399 44.1
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 5.9e-88 328.9 308 56.5
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 7.7e-88 328.6 317 53.6
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.2e-85 321.2 264 59.5
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.6e-85 320.9 278 57.9
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.4e-81 307.0 233 61.4
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 5.6e-78 295.8 323 48.9
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 4.7e-69 266.2 371 38.8
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 5.2e-52 209.5 253 44.7
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 8.9e-52 208.8 169 55.6
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.9e-52 208.8 337 35.3
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.4e-49 200.7 225 48.9
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-45 187.6 167 56.3
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.4e-42 176.0 127 61.4
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 9.3e-41 172.2 121 62.8
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.6e-40 171.4 143 59.4
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 2.3e-39 167.5 191 49.2
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.3e-26 125.2 142 48.6
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.8e-26 123.6 384 29.7
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.2e-24 118.6 102 58.8
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 9.0e-20 102.4 81 56.8
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.3e-18 98.6 112 49.1
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.5e-17 94.4 64 65.6
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 4.8e-13 80.1 62 59.7
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.2e-11 75.5 73 49.3
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.9e-11 73.2 67 53.7
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.0e-10 72.4 50 60.0
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.9e-09 68.2 72 52.8
CBR_g38908 Chara braunii HOM05D021006 ORTHO05D024937 2.7e-08 64.3 241 25.7
CBR_g38907 Chara braunii HOM05D021006 ORTHO05D024937 8.8e-07 59.3 360 24.7
CBR_g38900 Chara braunii HOM05D021006 ORTHO05D024937 1.1e-06 58.9 149 28.9
CBR_g38904 Chara braunii HOM05D021006 ORTHO05D024937 2.5e-06 57.8 149 28.2
PRCOL_00002046 Prasinoderma coloniale HOM05D021006 ORTHO05D024937 9.7e-06 55.8 164 26.8


User provided reference genes

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