Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 9.9e-236 819.7 403 100.0
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 6.3e-182 641.0 403 75.7
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.5e-172 608.6 402 71.9
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.9e-172 607.8 402 71.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.6e-169 599.7 401 69.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 1.4e-168 596.7 401 68.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.3e-168 595.9 401 70.1
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 8.8e-168 594.0 401 69.6
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 3.4e-167 592.0 401 69.3
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 5.7e-167 591.3 401 69.1
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-166 590.1 401 69.1
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.8e-166 589.0 401 69.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 3.7e-166 588.6 401 69.6
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.7e-166 588.6 401 69.6
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 4.8e-166 588.2 401 68.6
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 4.8e-166 588.2 401 68.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 4.8e-166 588.2 401 68.8
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 6.3e-166 587.8 401 68.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 8.3e-166 587.4 401 68.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.4e-165 586.6 401 68.3
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.4e-165 586.6 403 69.0
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.8e-165 586.3 401 69.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.8e-165 586.3 401 69.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.4e-165 585.9 401 68.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.4e-165 585.9 401 68.1
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.4e-165 585.9 401 68.1
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 2.4e-165 585.9 401 69.1
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 4.1e-165 585.1 401 67.6
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.1e-165 585.1 401 68.6
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 5.4e-165 584.7 401 68.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 5.4e-165 584.7 401 68.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 5.4e-165 584.7 401 68.8
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 7.0e-165 584.3 401 67.6
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.0e-165 584.3 399 68.7
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 9.1e-165 583.9 401 69.1
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.6e-164 583.2 401 68.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.6e-164 583.2 401 68.8
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.6e-164 583.2 401 68.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.6e-164 583.2 401 68.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.6e-164 583.2 401 68.8
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.6e-164 583.2 401 68.1
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.6e-164 583.2 397 69.8
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.6e-164 583.2 397 69.5
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.6e-164 583.2 401 68.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.0e-164 582.8 401 68.1
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 2.0e-164 582.8 397 70.0
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.0e-164 582.8 401 68.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 2.7e-164 582.4 401 67.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.7e-164 582.4 397 69.5
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 2.7e-164 582.4 401 68.1
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 2.7e-164 582.4 401 68.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.7e-164 582.4 401 67.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 3.5e-164 582.0 401 67.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.5e-164 582.0 401 67.6
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 3.5e-164 582.0 397 69.5
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.5e-164 582.0 401 68.3
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.5e-164 582.0 401 68.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.5e-164 581.6 401 67.6
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.5e-164 581.6 401 67.1
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 4.5e-164 581.6 401 68.3
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 5.9e-164 581.3 401 68.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 7.7e-164 580.9 401 68.3
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 7.7e-164 580.9 401 67.3
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.7e-164 580.9 397 69.5
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 7.7e-164 580.9 401 67.6
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 7.7e-164 580.9 401 68.1
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.0e-163 580.5 401 68.1
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.0e-163 580.5 401 66.6
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.0e-163 580.5 401 67.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.0e-163 580.5 401 69.1
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.0e-163 580.5 401 67.3
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-163 579.7 401 67.6
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-163 579.7 401 67.6
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.7e-163 579.7 401 67.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.7e-163 579.7 401 68.1
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.2e-163 579.3 401 68.1
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.2e-163 579.3 437 64.5
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.2e-163 579.3 401 67.8
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.8e-163 578.6 401 67.6
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 6.5e-163 577.8 401 67.8
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.5e-163 577.8 401 67.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 6.5e-163 577.8 401 67.8
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 8.5e-163 577.4 401 68.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 8.5e-163 577.4 401 67.6
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.1e-162 577.0 401 67.6
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.1e-162 577.0 401 66.8
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.1e-162 577.0 401 67.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.1e-162 577.0 401 67.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.1e-162 577.0 401 67.8
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.1e-162 577.0 401 67.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.5e-162 576.6 401 67.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.5e-162 576.6 401 67.1
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.5e-162 576.6 400 67.2
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.9e-162 576.2 397 67.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.5e-162 575.9 401 67.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.5e-162 575.9 401 67.1
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.5e-162 575.9 401 66.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.5e-162 575.9 410 66.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 4.2e-162 575.1 401 66.8
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 5.5e-162 574.7 401 67.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 5.5e-162 574.7 401 66.6
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 9.5e-162 573.9 401 66.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 9.5e-162 573.9 401 66.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.2e-161 573.5 401 65.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.6e-161 573.2 401 66.8
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.8e-161 572.4 399 66.7
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 4.7e-161 571.6 401 65.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 6.1e-161 571.2 401 66.3
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 8.0e-161 570.9 401 66.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 8.0e-161 570.9 397 67.0
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.0e-161 570.9 416 65.1
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.0e-160 570.5 413 65.4
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.4e-160 570.1 399 67.4
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.4e-160 570.1 401 66.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.4e-160 570.1 401 65.6
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.4e-160 570.1 401 67.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.8e-160 569.7 428 64.0
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 2.3e-160 569.3 413 65.4
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.8e-160 567.4 399 66.4
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.0e-159 566.2 401 65.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.5e-159 564.3 402 66.2
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.4e-157 559.3 401 67.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.4e-157 559.3 401 64.8
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.1e-157 558.9 404 65.8
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.2e-156 557.0 400 65.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.6e-156 556.6 396 65.2
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 3.5e-156 555.4 401 65.6
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.0e-155 553.9 401 66.1
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 5.0e-155 551.6 440 61.4
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 4.3e-154 548.5 418 63.2
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 1.0e-152 543.9 396 63.1
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.4e-149 532.7 375 66.9
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 9.2e-149 530.8 356 69.4
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 3.0e-147 525.8 359 66.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.3e-146 521.9 401 62.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.5e-143 513.5 401 61.8
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 3.7e-142 508.8 359 66.9
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.6e-137 493.4 401 61.3
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.2e-135 487.3 340 68.2
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 1.9e-133 479.9 401 60.3
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 9.2e-133 477.6 334 66.5
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.1e-120 436.0 399 53.9
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 2.6e-119 433.0 397 50.9
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.4e-117 426.4 288 68.4
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.1e-113 413.3 397 54.7
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 8.4e-110 401.4 399 52.4
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 4.0e-104 382.5 417 49.6
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 3.4e-103 379.4 259 70.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 8.7e-91 338.2 274 59.9
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.7e-83 311.6 301 53.2
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 5.7e-82 308.9 228 64.0
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 1.8e-72 277.3 214 61.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 2.4e-72 276.9 214 62.1
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 2.0e-71 273.9 214 61.2
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.2e-59 232.6 159 70.4
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 5.7e-58 229.2 162 62.3
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.1e-36 157.5 116 63.8
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 5.8e-34 149.4 346 29.2
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.5e-29 134.0 350 25.4
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.7e-22 111.3 72 65.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-14 84.3 320 25.0
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.0e-11 73.6 47 66.0
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 9.9e-10 68.9 44 65.9


User provided reference genes

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