Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 8.2e-288 993.0 508 100.0
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 6.5e-51 206.1 447 35.6
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.8e-46 190.7 312 42.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 9.4e-42 175.6 147 60.5
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 5.2e-40 169.9 188 53.2
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 8.8e-40 169.1 147 61.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 8.8e-40 169.1 150 58.0
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.0e-39 167.9 149 59.7
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.0e-39 167.9 148 58.8
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.0e-39 167.9 150 58.7
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.6e-39 167.5 148 60.1
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.6e-39 167.5 149 59.1
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 4.4e-39 166.8 148 59.5
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 5.7e-39 166.4 148 58.8
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 5.7e-39 166.4 147 60.5
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 7.5e-39 166.0 148 58.8
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 7.5e-39 166.0 193 50.8
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.5e-39 166.0 147 59.2
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.5e-39 166.0 148 58.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.8e-39 165.6 148 59.5
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 9.8e-39 165.6 226 48.7
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 9.8e-39 165.6 150 57.3
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 1.3e-38 165.2 148 59.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.7e-38 164.9 150 58.0
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.7e-38 164.9 148 58.8
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.7e-38 164.9 148 58.8
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.7e-38 164.9 148 58.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.7e-38 164.9 148 58.1
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.7e-38 164.9 150 56.7
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.7e-38 164.9 150 56.7
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.7e-38 164.9 148 58.8
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.2e-38 164.5 148 58.8
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.8e-38 164.1 148 59.5
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 2.8e-38 164.1 148 59.5
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 3.7e-38 163.7 179 52.0
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.7e-38 163.7 147 60.5
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.7e-38 163.7 147 60.5
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 3.7e-38 163.7 148 58.1
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.7e-38 163.7 148 58.8
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.7e-38 163.7 148 58.8
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.9e-38 163.3 148 57.4
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.9e-38 163.3 148 58.8
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 4.9e-38 163.3 186 50.0
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.3e-38 162.9 148 58.8
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.3e-38 162.9 148 58.8
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 6.3e-38 162.9 206 48.1
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 6.3e-38 162.9 146 57.5
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 6.3e-38 162.9 183 50.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.3e-38 162.9 148 58.1
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 6.3e-38 162.9 189 53.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 6.3e-38 162.9 148 58.8
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 8.3e-38 162.5 172 54.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 8.3e-38 162.5 176 52.8
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 8.3e-38 162.5 174 53.4
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 8.3e-38 162.5 169 53.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 8.3e-38 162.5 148 57.4
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.4e-37 161.8 148 58.1
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.4e-37 161.8 183 51.9
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-37 161.4 148 57.4
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.8e-37 161.4 175 52.0
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.4e-37 161.0 183 50.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 2.4e-37 161.0 148 56.8
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.4e-37 161.0 148 56.8
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.4e-37 161.0 182 51.1
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.4e-37 161.0 173 52.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.1e-37 160.6 184 50.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 3.1e-37 160.6 188 50.5
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 3.1e-37 160.6 192 50.0
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.1e-37 160.6 148 56.8
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 3.1e-37 160.6 148 56.8
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 3.1e-37 160.6 184 51.6
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.1e-37 160.6 148 57.4
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.1e-37 160.6 148 57.4
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.1e-37 160.2 220 45.9
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 4.1e-37 160.2 188 53.2
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.1e-37 160.2 188 51.1
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 5.4e-37 159.8 146 56.2
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 5.4e-37 159.8 179 52.5
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 7.0e-37 159.5 193 50.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 7.0e-37 159.5 182 50.0
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.0e-37 159.5 182 51.1
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 9.1e-37 159.1 148 58.1
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.2e-36 158.7 148 57.4
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.2e-36 158.7 176 52.8
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.6e-36 158.3 184 49.5
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.6e-36 158.3 206 48.1
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.6e-36 158.3 174 51.1
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 2.0e-36 157.9 174 50.6
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.0e-36 157.9 193 49.7
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 2.0e-36 157.9 174 50.6
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.0e-36 157.9 282 40.4
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.7e-36 157.5 147 55.8
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.7e-36 157.5 183 49.7
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 2.7e-36 157.5 206 48.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.7e-36 157.5 147 57.1
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.7e-36 157.5 147 57.1
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.5e-36 157.1 240 45.4
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.5e-36 157.1 146 57.5
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 3.5e-36 157.1 185 50.3
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.5e-36 157.1 183 51.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.5e-36 156.8 160 53.1
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 4.5e-36 156.8 221 45.7
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.5e-36 156.8 178 51.7
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 5.9e-36 156.4 186 51.1
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 5.9e-36 156.4 174 50.0
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 7.7e-36 156.0 177 50.8
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 7.7e-36 156.0 184 48.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.7e-36 156.0 206 47.6
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 7.7e-36 156.0 206 47.6
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.0e-35 155.6 193 48.7
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.0e-35 155.6 183 49.7
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.0e-35 155.6 154 55.8
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.0e-35 155.6 221 46.6
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.3e-35 155.2 205 45.9
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.3e-35 155.2 203 48.3
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.3e-35 155.2 205 47.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.7e-35 154.8 146 52.7
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.7e-35 154.8 146 52.7
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.7e-35 154.8 222 45.0
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.7e-35 154.8 226 44.7
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.3e-35 154.5 205 47.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.3e-35 154.5 177 49.7
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.3e-35 154.5 178 50.6
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 2.9e-35 154.1 253 41.5
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 3.8e-35 153.7 206 47.1
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 3.8e-35 153.7 207 46.9
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 3.8e-35 153.7 206 47.1
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 3.8e-35 153.7 207 46.9
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 5.0e-35 153.3 218 46.8
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 6.6e-35 152.9 185 49.2
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.6e-35 152.9 180 51.7
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 8.6e-35 152.5 206 46.6
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.1e-34 152.1 186 46.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.1e-34 152.1 231 45.0
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-34 151.8 184 48.4
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-34 151.8 179 49.2
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.5e-34 151.0 239 42.3
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 3.3e-34 150.6 147 53.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.3e-34 150.6 179 48.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 3.3e-34 150.6 218 45.9
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-34 150.2 147 53.1
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 4.2e-34 150.2 147 53.1
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 7.2e-34 149.4 225 44.9
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 9.5e-34 149.1 200 46.5
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.6e-33 147.1 177 47.5
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.6e-33 147.1 180 47.8
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 8.0e-33 146.0 221 43.9
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-31 142.1 153 51.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-31 142.1 256 40.2
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 3.4e-31 140.6 225 44.4
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 9.8e-31 139.0 225 42.2
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.9e-30 137.5 247 40.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 3.6e-25 120.6 150 51.3
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.0e-24 119.0 162 45.7
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.3e-22 112.1 154 43.5
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 2.9e-22 110.9 157 44.6
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.4e-21 108.6 76 68.4
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 3.5e-20 104.0 434 28.8
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.0e-19 100.1 145 44.1
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.3e-18 97.4 92 53.3
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.8e-08 65.1 101 35.6
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 8.9e-08 62.8 140 34.3
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 8.9e-08 62.8 191 32.5


User provided reference genes

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