Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 7.7e-100 367.1 177 100.0
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.0e-27 127.5 127 52.8
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.4e-24 117.1 88 61.4
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.4e-24 117.1 127 50.4
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 5.8e-23 111.7 88 56.8
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 7.6e-23 111.3 146 43.8
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.0e-22 110.9 89 56.2
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.3e-22 110.5 92 57.6
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.3e-22 110.5 96 53.1
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.7e-22 110.2 130 43.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 3.8e-22 109.0 99 54.5
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.8e-22 109.0 123 43.9
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.8e-22 109.0 123 43.9
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.9e-22 108.6 117 45.3
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 4.9e-22 108.6 90 53.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.9e-22 108.6 106 50.0
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.9e-22 108.6 85 56.5
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.5e-22 108.2 117 45.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 6.5e-22 108.2 86 57.0
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 6.5e-22 108.2 83 57.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 8.4e-22 107.8 87 52.9
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 8.4e-22 107.8 87 55.2
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 120 44.2
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-21 107.5 88 53.4
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.4e-21 107.1 90 53.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.4e-21 107.1 86 57.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.9e-21 106.7 87 56.3
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.9e-21 106.7 87 54.0
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.5e-21 106.3 116 45.7
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.5e-21 106.3 99 49.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 3.2e-21 105.9 86 53.5
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.2e-21 105.9 129 44.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 3.2e-21 105.9 110 48.2
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.2e-21 105.9 87 55.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.2e-21 105.5 94 50.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 4.2e-21 105.5 83 54.2
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 5.5e-21 105.1 126 46.0
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.5e-21 105.1 85 54.1
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 5.5e-21 105.1 87 51.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 5.5e-21 105.1 87 51.7
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.5e-21 105.1 83 54.2
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.5e-21 105.1 83 54.2
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 7.1e-21 104.8 95 51.6
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.1e-21 104.8 86 53.5
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 7.1e-21 104.8 87 55.2
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 9.3e-21 104.4 95 52.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 9.3e-21 104.4 90 52.2
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 9.3e-21 104.4 87 55.2
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 9.3e-21 104.4 85 56.5
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 9.3e-21 104.4 83 56.6
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.3e-21 104.4 85 52.9
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 9.3e-21 104.4 87 52.9
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.3e-21 104.4 85 55.3
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.2e-20 104.0 102 46.1
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.2e-20 104.0 120 45.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.2e-20 104.0 89 52.8
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.2e-20 104.0 120 45.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.2e-20 104.0 87 57.5
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-20 104.0 99 47.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-20 104.0 99 47.5
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.2e-20 104.0 87 52.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-20 103.6 117 43.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.6e-20 103.6 100 51.0
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.6e-20 103.6 90 51.1
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.6e-20 103.6 92 51.1
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.1e-20 103.2 87 54.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.1e-20 103.2 87 54.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.1e-20 103.2 99 49.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.1e-20 103.2 93 53.8
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.1e-20 103.2 86 52.3
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.1e-20 103.2 87 54.0
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.1e-20 103.2 86 52.3
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.7e-20 102.8 87 54.0
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.7e-20 102.8 95 51.6
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.7e-20 102.8 87 54.0
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.7e-20 102.8 87 56.3
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.7e-20 102.8 145 42.1
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.7e-20 102.8 83 53.0
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.7e-20 102.8 86 52.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 3.5e-20 102.4 90 53.3
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 3.5e-20 102.4 90 53.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.5e-20 102.4 83 50.6
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.5e-20 102.4 110 44.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.5e-20 102.4 99 47.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.5e-20 102.4 114 48.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.5e-20 102.4 84 52.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.5e-20 102.4 84 52.4
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 4.6e-20 102.1 83 55.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.6e-20 102.1 144 44.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.6e-20 102.1 85 54.1
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.6e-20 102.1 109 45.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 6.0e-20 101.7 83 54.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.0e-20 101.7 82 53.7
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.0e-20 101.7 104 48.1
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.0e-20 101.7 93 51.6
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 7.9e-20 101.3 97 48.5
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 7.9e-20 101.3 87 52.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 7.9e-20 101.3 87 52.9
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 7.9e-20 101.3 83 55.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.9e-20 101.3 86 52.3
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.0e-19 100.9 100 50.0
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.0e-19 100.9 94 48.9
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.0e-19 100.9 98 46.9
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.0e-19 100.9 125 41.6
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.0e-19 100.9 125 41.6
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.3e-19 100.5 83 49.4
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.3e-19 100.5 87 52.9
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.3e-19 100.5 121 43.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.8e-19 100.1 85 51.8
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.8e-19 100.1 88 51.1
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.3e-19 99.8 114 42.1
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.3e-19 99.8 93 47.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.3e-19 99.8 114 45.6
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.3e-19 99.8 86 54.7
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 3.0e-19 99.4 86 54.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.9e-19 99.0 85 52.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 6.7e-19 98.2 86 54.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 6.7e-19 98.2 87 49.4
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 8.7e-19 97.8 90 52.2
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 8.7e-19 97.8 150 42.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.5e-18 97.1 83 54.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 3.3e-18 95.9 88 52.3
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 3.3e-18 95.9 85 50.6
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 4.3e-18 95.5 104 45.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 9.6e-18 94.4 85 49.4
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 9.6e-18 94.4 88 52.3
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.3e-17 94.0 123 40.7
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-17 94.0 123 42.3
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.7e-17 92.4 85 48.2
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-16 90.9 94 44.7
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.8e-16 90.1 108 42.6
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.8e-16 90.1 91 46.2
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 3.1e-16 89.4 97 44.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 9.0e-16 87.8 95 45.3
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.0e-15 86.7 134 34.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.0e-15 86.7 94 47.9
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 5.8e-15 85.1 95 42.1
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 3.8e-14 82.4 88 44.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.8e-14 82.4 102 42.2
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.0e-14 82.0 100 41.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 8.4e-14 81.3 84 48.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.5e-13 79.7 59 59.3
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.5e-13 79.7 74 45.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.1e-08 62.8 45 60.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.2e-07 60.8 47 61.7
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.5e-07 60.5 70 44.3


User provided reference genes

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