Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 8.5e-235 816.6 411 100.0
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.8e-120 436.8 352 64.8
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.0e-118 431.0 271 74.9
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.8e-115 420.2 348 62.6
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.2e-114 417.5 270 70.4
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 7.5e-114 414.8 286 67.5
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 1.7e-113 413.7 286 67.5
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.7e-113 413.7 272 69.1
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 3.7e-113 412.5 306 65.7
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.7e-113 412.5 272 69.5
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 3.7e-113 412.5 299 65.6
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 4.9e-113 412.1 272 70.2
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 4.9e-113 412.1 272 70.2
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 4.9e-113 412.1 313 63.6
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 6.3e-113 411.8 286 66.1
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 8.3e-113 411.4 272 69.5
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.1e-112 411.0 272 70.2
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 1.8e-112 410.2 287 67.2
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 1.8e-112 410.2 287 67.2
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 2.4e-112 409.8 346 59.5
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.4e-112 409.8 326 60.7
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 2.4e-112 409.8 274 67.9
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 3.1e-112 409.5 294 64.6
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 3.1e-112 409.5 277 67.5
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 5.4e-112 408.7 295 65.8
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 7.0e-112 408.3 286 66.8
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 9.1e-112 407.9 270 70.0
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 1.2e-111 407.5 299 64.9
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 1.6e-111 407.1 296 64.9
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.6e-111 407.1 272 69.5
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 2.7e-111 406.4 275 68.0
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.7e-111 406.4 268 70.1
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 2.7e-111 406.4 286 65.7
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.7e-111 406.4 338 61.2
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.5e-111 406.0 274 68.2
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 3.5e-111 406.0 291 66.3
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 3.5e-111 406.0 286 66.1
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 3.5e-111 406.0 268 69.0
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 3.5e-111 406.0 295 64.7
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 4.5e-111 405.6 272 67.3
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 4.5e-111 405.6 274 68.2
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 4.5e-111 405.6 295 65.4
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 4.5e-111 405.6 270 68.9
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 5.9e-111 405.2 286 65.0
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 5.9e-111 405.2 296 65.2
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 5.9e-111 405.2 272 69.1
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 7.7e-111 404.8 272 68.0
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 7.7e-111 404.8 268 67.5
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 1.0e-110 404.4 272 66.9
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.3e-110 404.1 272 68.8
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.7e-110 403.7 284 68.0
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.3e-110 403.3 277 68.6
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 5.0e-110 402.1 296 62.8
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 5.0e-110 402.1 332 60.8
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.6e-110 401.7 272 68.8
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 8.6e-110 401.4 282 67.0
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 8.6e-110 401.4 282 67.0
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 8.6e-110 401.4 296 62.8
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 8.6e-110 401.4 296 62.8
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.1e-109 401.0 272 68.4
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.1e-109 401.0 276 68.5
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.1e-109 401.0 272 68.8
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-109 401.0 272 69.1
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.1e-109 401.0 278 65.8
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.5e-109 400.6 279 66.3
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.5e-109 400.6 272 68.4
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 1.5e-109 400.6 295 64.4
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.9e-109 400.2 291 63.6
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.9e-109 400.2 270 68.1
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.9e-109 400.2 272 68.0
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.5e-109 399.8 272 66.5
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 2.5e-109 399.8 272 67.3
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 3.3e-109 399.4 272 66.9
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 3.3e-109 399.4 272 69.1
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.3e-109 399.4 278 65.5
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 3.3e-109 399.4 291 64.6
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 3.3e-109 399.4 272 68.8
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 4.2e-109 399.1 270 68.1
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.6e-109 398.7 272 68.0
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 5.6e-109 398.7 272 67.6
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 5.6e-109 398.7 296 62.5
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 7.2e-109 398.3 270 68.9
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 9.5e-109 397.9 350 54.9
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 2.1e-108 396.7 270 66.3
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 2.1e-108 396.7 272 66.5
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.6e-108 396.0 278 66.5
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 6.1e-108 395.2 286 64.3
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.0e-107 394.4 276 67.4
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.0e-107 394.4 272 66.5
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.4e-107 394.0 272 67.3
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.8e-107 393.7 352 57.1
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 5.2e-107 392.1 272 65.4
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 6.8e-107 391.7 262 68.3
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 8.9e-107 391.3 310 60.6
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 5.7e-106 388.7 274 63.5
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 7.5e-106 388.3 271 67.5
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 2.9e-105 386.3 293 63.5
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 2.9e-105 386.3 317 58.7
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 8.3e-105 384.8 263 70.7
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.1e-104 384.4 262 66.0
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 1.1e-104 384.4 272 64.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.4e-104 384.0 272 65.1
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 1.8e-104 383.6 293 60.8
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.2e-104 382.9 311 58.2
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 9.2e-104 381.3 282 63.8
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.2e-103 380.9 272 65.1
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.6e-103 380.6 251 71.3
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 6.6e-102 375.2 251 69.7
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.9e-101 373.6 282 64.5
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.8e-100 369.8 253 65.6
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 4.4e-98 362.5 260 65.4
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 5.8e-98 362.1 256 66.0
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.7e-97 360.5 368 50.3
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 6.6e-94 348.6 347 52.4
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.9e-93 347.1 270 60.0
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 5.6e-93 345.5 270 62.6
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 7.1e-88 328.6 337 51.3
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 3.1e-83 313.2 214 66.4
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.7e-81 307.4 222 66.2
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 3.3e-77 293.1 231 60.2
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.2e-71 274.6 186 65.1
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.7e-65 254.2 232 57.3
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 8.7e-62 241.9 302 46.4
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 4.8e-60 236.1 272 46.0
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 9.3e-56 221.9 142 68.3
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.2e-50 204.9 140 65.0
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.1e-46 189.5 134 65.7
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.6e-39 166.4 96 76.0
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 3.6e-31 140.2 175 46.3
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 3.9e-30 136.7 95 71.6
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 3.9e-30 136.7 120 59.2
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.3e-28 131.7 180 40.0
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.1e-27 128.6 84 75.0
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 5.1e-22 109.8 161 39.1
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.7e-20 103.6 59 71.2
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 3.7e-20 103.6 61 72.1
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 6.3e-20 102.8 66 72.7
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.2e-18 98.6 60 75.0
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 2.0e-18 97.8 72 65.3
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 4.0e-14 83.6 70 60.0
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 4.4e-13 80.1 71 53.5
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.2e-10 72.0 42 66.7
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.9e-08 64.7 48 56.2


User provided reference genes

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