Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.2e-178 629.8 322 100.0
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 5.2e-94 348.6 284 60.2
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.7e-89 333.6 289 58.1
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.9e-89 332.8 308 53.2
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 8.5e-89 331.3 289 55.0
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 8.5e-89 331.3 310 52.6
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.5e-88 329.7 287 55.7
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.2e-88 329.3 286 55.6
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 9.4e-88 327.8 289 56.7
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 9.4e-88 327.8 287 55.7
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.6e-87 327.0 300 54.7
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.1e-87 326.6 279 55.9
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.1e-87 326.6 292 55.1
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 3.6e-87 325.9 304 54.6
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 4.7e-87 325.5 292 55.5
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.0e-87 324.7 297 54.2
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 8.0e-87 324.7 290 56.2
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.4e-86 323.9 279 55.6
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.8e-86 323.6 286 53.5
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 2.3e-86 323.2 304 53.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 5.2e-86 322.0 283 57.6
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.2e-85 320.9 292 53.4
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.2e-85 320.9 279 55.2
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-85 320.9 297 53.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-85 320.9 297 53.2
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.2e-85 320.9 300 53.3
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.2e-85 320.9 309 51.5
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.0e-85 320.1 306 52.6
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 3.4e-85 319.3 306 52.6
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 3.4e-85 319.3 291 54.0
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 4.4e-85 318.9 287 54.4
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 4.4e-85 318.9 277 58.8
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 5.7e-85 318.5 295 53.6
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 7.5e-85 318.2 300 53.3
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.8e-85 317.8 306 53.6
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.3e-84 317.4 292 53.1
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.3e-84 317.4 291 55.3
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.7e-84 317.0 288 54.9
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.2e-84 316.6 294 56.1
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.2e-84 316.6 289 54.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.8e-84 316.2 298 53.0
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.7e-84 315.8 306 52.9
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.8e-84 315.5 288 54.5
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 4.8e-84 315.5 307 51.8
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 6.3e-84 315.1 306 53.3
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 6.3e-84 315.1 279 55.6
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 8.3e-84 314.7 290 54.1
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 8.3e-84 314.7 282 55.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 8.3e-84 314.7 282 55.7
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-83 314.3 296 53.4
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-83 314.3 288 54.2
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.1e-83 314.3 281 54.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.1e-83 314.3 296 53.4
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.1e-83 314.3 306 52.3
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.4e-83 313.9 292 53.8
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.4e-83 313.9 290 54.8
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.4e-83 313.9 279 55.6
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.8e-83 313.5 289 54.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.8e-83 313.5 291 53.6
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.4e-83 313.2 289 54.0
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.1e-83 312.8 295 52.5
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 4.1e-83 312.4 279 54.1
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 4.1e-83 312.4 289 52.9
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 5.4e-83 312.0 282 55.0
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.4e-83 312.0 291 53.3
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 9.1e-83 311.2 287 55.1
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.2e-82 310.8 288 54.2
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.2e-82 310.8 291 52.2
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.6e-82 310.5 281 54.4
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 3.5e-82 309.3 286 54.9
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 3.5e-82 309.3 286 52.1
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 4.5e-82 308.9 290 54.5
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.5e-82 308.9 279 54.5
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 5.9e-82 308.5 275 53.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 7.7e-82 308.1 287 54.7
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 7.7e-82 308.1 315 54.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.0e-81 307.8 287 54.7
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.0e-81 307.8 287 54.4
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-81 307.4 281 52.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.7e-81 307.0 286 54.5
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-81 307.0 296 52.0
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-81 307.0 296 52.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 2.2e-81 306.6 281 54.4
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.2e-81 306.6 325 53.8
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 5.0e-81 305.4 288 52.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 6.5e-81 305.1 287 54.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 6.5e-81 305.1 286 53.8
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 8.5e-81 304.7 301 51.5
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.5e-80 303.9 288 53.1
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.9e-80 303.5 285 52.6
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.9e-80 303.5 278 53.2
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.5e-80 303.1 330 48.5
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.5e-80 303.1 271 56.5
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.5e-80 303.1 278 53.2
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 3.2e-80 302.8 279 52.3
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 5.5e-80 302.0 280 52.5
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 5.5e-80 302.0 293 50.9
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.2e-79 300.8 287 53.7
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.1e-79 300.1 308 51.9
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.1e-79 300.1 297 51.5
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.7e-79 299.7 289 51.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.7e-79 298.9 308 51.6
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.0e-78 297.7 278 52.9
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.4e-78 297.4 306 50.3
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.4e-78 297.4 289 51.2
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.4e-78 297.4 279 53.0
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 3.0e-78 296.2 289 52.2
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 4.0e-78 295.8 290 53.1
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.8e-78 295.0 279 52.0
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 8.8e-78 294.7 342 46.8
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 8.8e-78 294.7 279 53.0
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.2e-77 294.3 266 53.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.2e-77 294.3 292 52.7
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.2e-77 294.3 285 50.9
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.5e-77 293.9 293 51.5
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.4e-77 292.7 279 50.5
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 9.8e-77 291.2 289 52.6
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.7e-76 290.4 266 51.1
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.8e-76 289.7 279 53.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 4.9e-76 288.9 316 48.1
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.3e-76 288.5 280 51.8
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 6.3e-76 288.5 303 51.5
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-75 287.7 290 50.3
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.1e-75 287.7 311 47.9
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.4e-75 286.6 288 53.8
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 9.2e-75 284.6 254 55.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.0e-74 283.5 297 49.8
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.0e-73 281.2 280 51.4
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.1e-72 277.7 279 49.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 4.3e-72 275.8 300 47.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.5e-72 274.6 253 53.4
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.6e-71 272.7 260 52.7
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 3.4e-69 266.2 280 49.6
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 3.9e-65 252.7 227 52.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.1e-62 243.0 297 45.5
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.1e-62 243.0 296 44.3
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.3e-60 237.7 307 43.0
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 4.9e-60 235.7 304 43.1
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-59 233.4 226 50.0
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-56 223.4 214 52.3
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 8.1e-55 218.4 231 50.2
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 4.0e-54 216.1 210 49.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.2e-53 214.5 258 42.2
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.9e-52 209.1 291 41.2
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 6.4e-52 208.8 250 44.8
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.6e-50 204.1 213 48.8
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.1e-46 189.9 292 39.4
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.4e-45 186.0 193 49.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 2.3e-41 173.7 201 45.8
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 3.0e-41 173.3 283 37.1
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.6e-40 169.1 317 36.3
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 5.6e-40 169.1 165 54.5
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.8e-38 164.1 176 46.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 4.4e-37 159.5 151 49.0
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 9.9e-37 158.3 171 48.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 4.6e-34 149.4 130 53.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.8e-31 139.4 130 51.5
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.2e-29 134.8 325 31.1
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 4.2e-27 126.3 277 33.2
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 5.6e-24 115.9 289 29.4
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.0e-17 95.1 283 29.7
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 4.3e-16 89.7 104 44.2
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.1e-15 87.4 105 43.8
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.4e-14 84.7 70 52.9
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 4.2e-11 73.2 129 36.4
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 1.8e-09 67.8 57 57.9


User provided reference genes

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