Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 4.4e-135 484.6 237 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.3e-65 253.8 155 74.2
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 5.0e-62 241.9 144 71.5
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.2e-58 230.7 154 69.5
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.7e-55 218.0 169 55.6
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.9e-53 213.4 136 69.1
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.6e-52 210.3 207 51.2
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.8e-51 206.8 148 62.2
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 5.2e-51 205.3 145 62.1
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 6.8e-51 204.9 148 61.5
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 8.9e-51 204.5 148 61.5
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 8.9e-51 204.5 148 59.5
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 8.9e-51 204.5 209 49.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.2e-50 204.1 177 53.7
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.5e-50 203.8 148 59.5
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.5e-50 203.8 203 50.2
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.5e-50 203.8 148 60.8
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.0e-50 203.4 148 60.1
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.0e-50 203.4 144 61.8
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 2.6e-50 203.0 145 60.7
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 3.4e-50 202.6 210 48.6
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 3.4e-50 202.6 142 62.7
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 4.4e-50 202.2 147 59.2
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.4e-50 202.2 144 62.5
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 5.7e-50 201.8 144 61.8
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 5.7e-50 201.8 142 60.6
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 7.5e-50 201.4 186 53.2
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 9.8e-50 201.1 142 60.6
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.3e-49 200.7 147 61.2
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-49 200.7 142 60.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.3e-49 200.7 142 63.4
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.3e-49 200.7 147 61.9
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.3e-49 200.7 148 58.8
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.7e-49 200.3 148 59.5
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.7e-49 200.3 148 59.5
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.7e-49 200.3 148 59.5
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.8e-49 199.5 147 59.2
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 3.7e-49 199.1 145 60.7
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.7e-49 199.1 148 58.8
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 4.9e-49 198.7 148 58.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 4.9e-49 198.7 148 58.1
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-48 197.6 147 59.2
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.1e-48 197.6 144 59.7
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.1e-48 197.6 144 59.0
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.8e-48 196.8 142 59.2
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.8e-48 196.8 148 58.8
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.8e-48 196.8 144 60.4
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 2.4e-48 196.4 144 59.7
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.2e-48 196.1 144 59.7
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.1e-48 195.7 203 48.8
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.1e-48 195.7 144 59.7
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 4.1e-48 195.7 163 55.2
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.1e-48 195.7 142 59.9
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 4.1e-48 195.7 144 59.7
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 4.1e-48 195.7 142 59.9
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 4.1e-48 195.7 142 60.6
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.2e-48 194.5 148 57.4
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.6e-47 193.7 145 58.6
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.6e-47 193.7 145 58.6
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.0e-47 193.4 145 55.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.0e-47 193.4 145 55.9
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.0e-47 193.4 159 56.6
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.7e-47 193.0 150 56.0
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.5e-47 192.2 170 51.8
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.5e-47 192.2 145 57.9
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 7.8e-47 191.4 140 60.0
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-46 190.7 170 52.4
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 2.3e-46 189.9 141 61.0
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.3e-46 189.9 180 50.6
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 6.6e-46 188.3 198 46.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 8.6e-46 188.0 142 57.7
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 8.6e-46 188.0 213 45.1
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 8.6e-46 188.0 142 57.0
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-45 186.8 198 46.5
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.5e-45 186.4 142 57.0
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 5.6e-45 185.3 142 57.0
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 9.5e-45 184.5 148 56.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 9.5e-45 184.5 142 56.3
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.2e-44 184.1 167 47.9
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-44 184.1 140 57.9
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.2e-44 184.1 142 56.3
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.7e-44 182.2 142 53.5
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.7e-44 182.2 142 53.5
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 6.1e-44 181.8 123 65.9
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.0e-43 181.0 123 62.6
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.4e-43 180.6 120 64.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.4e-43 180.6 144 56.9
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 4.0e-43 179.1 142 53.5
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 4.0e-43 179.1 142 52.8
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.0e-43 179.1 149 55.0
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.9e-43 177.9 142 51.4
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 8.9e-43 177.9 142 53.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 8.9e-43 177.9 129 60.5
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.5e-42 177.2 142 54.9
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.5e-42 177.2 119 66.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.0e-42 176.8 120 65.0
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.0e-42 176.8 142 53.5
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.6e-42 176.4 139 59.0
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.5e-42 174.9 201 43.3
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-40 170.2 142 52.1
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.4e-40 169.9 145 49.7
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.4e-40 169.9 129 57.4
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-39 167.5 200 44.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.7e-39 166.4 116 65.5
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 3.5e-39 166.0 144 51.4
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.6e-39 165.6 154 51.9
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.3e-38 163.3 150 49.3
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.9e-38 162.5 202 42.1
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.5e-37 160.6 137 54.0
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.9e-37 160.2 222 40.1
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 5.6e-37 158.7 114 61.4
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.2e-36 157.5 104 64.4
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.2e-36 157.5 169 46.2
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.6e-36 157.1 165 47.9
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.8e-36 156.4 142 47.9
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.7e-36 155.6 259 36.7
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 8.0e-36 154.8 142 46.5
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.1e-35 154.5 105 61.0
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.8e-35 153.7 142 45.1
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.3e-35 153.3 174 43.1
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 4.0e-35 152.5 105 59.0
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 4.0e-35 152.5 105 61.9
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.2e-35 152.1 142 46.5
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 8.9e-35 151.4 145 49.7
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.5e-34 150.6 142 43.7
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.4e-34 149.4 142 44.4
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 5.8e-34 148.7 145 42.8
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 5.8e-34 148.7 145 42.8
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 7.5e-34 148.3 165 40.0
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 7.5e-34 148.3 165 40.0
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 7.5e-34 148.3 165 40.0
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 7.5e-34 148.3 165 40.0
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 9.8e-34 147.9 145 42.8
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.9e-33 145.6 202 38.1
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.9e-33 145.6 142 45.8
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 2.4e-32 143.3 154 45.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.2e-28 131.0 142 40.8
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 2.1e-28 130.2 88 61.4
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 2.8e-28 129.8 150 42.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 4.7e-28 129.0 145 44.8
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 3.1e-27 126.3 139 44.6
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 5.2e-27 125.6 88 59.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.6e-26 123.2 87 57.5
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 8.3e-25 118.2 109 46.8
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.2e-24 116.3 88 54.5
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.1e-23 113.6 88 53.4
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.6e-20 104.0 64 67.2
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.1e-19 101.3 79 53.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.4e-19 100.9 145 40.0
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 6.8e-19 98.6 70 58.6
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.6e-18 96.7 70 57.1
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 4.4e-18 95.9 147 35.4
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 3.8e-17 92.8 68 57.4
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 6.4e-17 92.0 70 55.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.9e-16 90.5 70 54.3
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 7.1e-16 88.6 62 58.1
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-15 87.8 113 40.7
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.7e-15 86.7 142 33.1
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 1.6e-12 77.4 56 60.7
CBR_g10981 Chara braunii HOM05D060542 ORTHO05D043949 3.1e-11 73.2 152 31.6
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.9e-08 63.9 85 40.0
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 4.2e-08 62.8 57 47.4
Pp3c24_270 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.2e-07 61.2 63 41.3


User provided reference genes

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