Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.9e-128 461.5 229 100.0
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.0e-72 277.3 229 63.8
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.0e-67 260.8 161 73.9
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.4e-63 245.7 145 76.6
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.0e-56 224.2 229 49.3
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.6e-41 173.7 165 51.5
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 3.6e-41 172.6 160 53.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.0e-41 171.4 185 48.6
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 3.1e-40 169.5 159 52.2
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.0e-40 169.1 162 51.9
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 8.9e-40 167.9 179 48.0
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.5e-39 167.2 146 54.1
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 2.6e-39 166.4 140 56.4
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.6e-39 166.4 148 54.1
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 3.4e-39 166.0 201 47.8
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 4.4e-39 165.6 140 56.4
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 5.8e-39 165.2 148 53.4
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 5.8e-39 165.2 146 54.1
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 5.8e-39 165.2 140 56.4
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 7.5e-39 164.9 149 53.7
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 7.5e-39 164.9 174 50.0
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 9.8e-39 164.5 148 54.1
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.3e-38 164.1 165 52.7
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.3e-38 164.1 140 55.0
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.7e-38 163.7 147 53.1
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.7e-38 163.7 140 55.7
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.7e-38 163.7 150 52.7
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.2e-38 163.3 153 54.2
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 2.2e-38 163.3 150 54.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.9e-38 162.9 140 55.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.9e-38 162.9 146 53.4
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 2.9e-38 162.9 146 53.4
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 3.7e-38 162.5 140 55.7
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 3.7e-38 162.5 153 53.6
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 3.7e-38 162.5 198 45.5
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.7e-38 162.5 195 45.1
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 3.7e-38 162.5 140 56.4
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 4.9e-38 162.2 180 47.8
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 4.9e-38 162.2 140 55.7
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 4.9e-38 162.2 140 55.0
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 4.9e-38 162.2 148 52.7
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 6.4e-38 161.8 140 55.7
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 6.4e-38 161.8 174 46.6
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.4e-38 161.8 182 47.3
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 6.4e-38 161.8 140 55.7
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 6.4e-38 161.8 197 46.2
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 8.3e-38 161.4 141 57.4
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 8.3e-38 161.4 140 55.0
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 8.3e-38 161.4 141 53.9
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 8.3e-38 161.4 145 53.1
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.3e-38 161.4 186 47.8
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 8.3e-38 161.4 140 54.3
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 8.3e-38 161.4 156 51.9
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.1e-37 161.0 186 47.8
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.1e-37 161.0 186 47.8
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.1e-37 161.0 146 52.7
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.1e-37 161.0 140 55.0
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.1e-37 161.0 156 51.9
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.9e-37 160.2 140 54.3
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.9e-37 160.2 140 54.3
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.9e-37 160.2 139 56.1
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 2.4e-37 159.8 179 46.9
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 2.4e-37 159.8 149 52.3
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.4e-37 159.8 140 55.7
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 2.4e-37 159.8 153 52.3
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 3.2e-37 159.5 140 52.9
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 3.2e-37 159.5 140 54.3
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 3.2e-37 159.5 140 53.6
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 4.1e-37 159.1 140 53.6
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 4.1e-37 159.1 140 53.6
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 4.1e-37 159.1 150 51.3
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 4.1e-37 159.1 150 50.7
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 4.1e-37 159.1 140 52.9
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 7.0e-37 158.3 140 53.6
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 7.0e-37 158.3 186 47.8
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 1.6e-36 157.1 140 54.3
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 2.0e-36 156.8 150 52.7
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.7e-36 156.4 156 50.0
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 2.7e-36 156.4 140 54.3
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.7e-36 156.4 140 54.3
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.7e-36 156.4 140 54.3
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.7e-36 156.4 141 51.8
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.5e-36 156.0 140 54.3
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 3.5e-36 156.0 140 54.3
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 4.6e-36 155.6 204 43.1
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 4.6e-36 155.6 140 53.6
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 7.8e-36 154.8 202 43.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.0e-35 154.5 140 54.3
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.7e-35 153.7 140 52.1
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.3e-35 153.3 147 51.0
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 3.0e-35 152.9 140 52.1
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 6.6e-35 151.8 140 53.6
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 8.6e-35 151.4 204 42.2
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.5e-34 150.6 139 52.5
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 3.6e-33 146.0 183 43.2
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 6.8e-32 141.7 179 42.5
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 9.8e-31 137.9 131 52.7
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.9e-30 136.3 126 54.8
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 3.7e-30 136.0 118 56.8
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 6.4e-30 135.2 117 57.3
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.4e-29 134.0 118 56.8
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.9e-29 133.7 124 53.2
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 2.4e-29 133.3 111 55.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 2.4e-29 133.3 135 51.9
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 3.2e-29 132.9 120 55.8
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 4.1e-29 132.5 155 47.1
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 7.1e-29 131.7 129 52.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 3.5e-28 129.4 152 50.0
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.5e-28 129.4 118 54.2
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 3.0e-27 126.3 96 64.6
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 5.1e-27 125.6 149 45.0
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 8.6e-27 124.8 168 41.7
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 4.3e-26 122.5 111 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 2.1e-25 120.2 88 60.2
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.8e-24 117.1 104 55.8
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 8.9e-24 114.8 126 45.2
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 2.0e-23 113.6 129 45.7
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.4e-23 112.8 109 52.3
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.3e-22 110.9 118 55.1
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 3.1e-16 89.7 137 36.5
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.1e-16 89.7 111 44.1
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 5.2e-16 89.0 137 35.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.2e-15 87.8 96 49.0
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.8e-15 85.5 71 59.2
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.7e-14 84.0 149 33.6
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.7e-14 84.0 86 51.2
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 9.3e-13 78.2 61 62.3
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.2e-12 77.8 56 57.1
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.6e-12 77.4 86 45.3
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.0e-11 74.7 123 35.0
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 4.3e-10 69.3 51 54.9
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.4e-08 64.3 114 34.2


User provided reference genes

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