Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 7.3e-234 813.5 413 100.0
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.8e-177 625.5 391 81.1
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 2.4e-176 622.5 392 81.1
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 2.0e-175 619.4 364 84.6
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 3.4e-175 618.6 397 79.1
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.5e-170 603.2 363 81.8
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 3.8e-166 588.6 364 80.8
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.4e-165 586.6 363 79.3
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 5.5e-165 584.7 361 79.5
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 9.4e-165 583.9 371 77.6
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.2e-164 583.6 363 78.2
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.1e-164 582.8 360 79.4
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 2.1e-164 582.8 363 78.0
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 3.6e-164 582.0 363 78.0
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 7.9e-164 580.9 360 79.2
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 1.0e-163 580.5 408 72.8
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.8e-163 579.7 363 78.5
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.8e-163 579.7 379 76.3
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.3e-163 579.3 361 78.4
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 2.3e-163 579.3 371 77.1
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.3e-163 579.3 370 77.0
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 3.0e-163 578.9 360 78.9
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.1e-162 577.0 363 78.2
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 2.0e-162 576.2 382 74.6
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 2.0e-162 576.2 357 79.3
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.5e-162 575.9 360 77.5
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.5e-162 575.9 363 78.2
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 2.5e-162 575.9 363 78.0
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 2.5e-162 575.9 363 77.4
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 5.7e-162 574.7 360 77.8
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 7.4e-162 574.3 394 74.1
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 7.4e-162 574.3 401 71.8
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 9.7e-162 573.9 363 77.7
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.3e-161 573.5 363 77.1
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 1.3e-161 573.5 360 77.2
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.3e-161 573.5 361 78.1
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.7e-161 573.2 363 77.1
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.7e-161 573.2 363 77.1
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 1.7e-161 573.2 363 77.1
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.2e-161 572.8 360 77.2
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.8e-161 572.4 363 77.4
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.7e-161 572.0 363 77.4
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 3.7e-161 572.0 360 77.2
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 4.8e-161 571.6 360 76.9
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.8e-161 571.6 360 77.2
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 6.3e-161 571.2 360 78.1
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 6.3e-161 571.2 363 76.9
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 8.2e-161 570.9 386 73.6
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.1e-160 570.5 377 75.3
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.4e-160 570.1 360 76.9
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 1.4e-160 570.1 363 76.9
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 1.8e-160 569.7 360 76.7
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 3.1e-160 568.9 363 76.9
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.3e-160 568.2 363 76.9
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 6.9e-160 567.8 363 77.1
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 9.1e-160 567.4 358 77.7
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.5e-159 565.1 362 76.5
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 4.5e-159 565.1 343 79.6
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.0e-158 563.9 361 76.7
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.3e-158 563.5 360 76.4
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.7e-158 563.1 360 76.7
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 2.9e-158 562.4 399 71.9
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.1e-157 560.5 388 72.4
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 1.9e-157 559.7 376 74.7
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.9e-157 559.7 361 76.7
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 9.4e-157 557.4 363 76.6
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-156 557.0 323 82.0
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.6e-156 556.6 361 75.6
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-156 556.2 360 76.9
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 2.7e-156 555.8 360 76.4
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 2.7e-156 555.8 417 67.9
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 3.6e-156 555.4 358 76.0
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 4.7e-156 555.1 386 71.8
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.8e-155 553.1 363 74.9
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 3.9e-155 552.0 388 70.9
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 6.7e-155 551.2 405 69.4
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.5e-154 550.1 360 75.8
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 4.4e-154 548.5 412 69.9
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 2.2e-153 546.2 360 74.4
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 2.2e-153 546.2 417 68.1
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.8e-153 545.8 360 75.3
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.3e-153 544.7 360 75.6
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 6.3e-153 544.7 360 74.4
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 8.2e-153 544.3 360 75.8
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.2e-153 544.3 360 75.8
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 8.2e-153 544.3 358 74.6
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.4e-152 543.5 360 75.6
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 1.8e-152 543.1 360 74.7
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 2.4e-152 542.7 363 74.4
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.4e-152 542.7 360 75.0
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 3.1e-152 542.3 367 73.8
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 3.1e-152 542.3 367 74.1
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 4.1e-152 542.0 360 73.9
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 4.1e-152 542.0 360 73.9
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 4.1e-152 542.0 360 74.7
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 7.0e-152 541.2 359 74.9
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 7.0e-152 541.2 359 74.9
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.6e-151 540.0 361 74.8
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 2.0e-151 539.7 382 71.7
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 2.6e-151 539.3 397 69.3
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.7e-150 536.6 360 73.6
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.7e-150 536.6 363 73.6
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.2e-150 536.2 394 69.0
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.8e-150 535.4 371 72.0
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 8.5e-150 534.3 313 79.9
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 4.7e-148 528.5 361 73.1
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 6.3e-145 518.1 345 75.4
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.4e-144 516.2 370 69.5
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 5.9e-143 511.5 382 67.0
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 3.8e-142 508.8 363 71.6
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 4.7e-140 501.9 299 82.3
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 5.2e-139 498.4 360 70.8
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 5.2e-139 498.4 360 70.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 5.2e-139 498.4 372 67.7
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 1.1e-133 480.7 281 81.9
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 7.2e-133 478.0 361 67.3
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 3.4e-130 469.2 358 66.5
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.3e-125 452.6 363 68.0
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 9.5e-125 451.1 350 66.0
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 5.2e-123 445.3 375 59.5
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 6.8e-123 444.9 349 65.6
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 4.9e-121 438.7 383 60.6
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 8.3e-121 438.0 372 62.4
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 1.4e-120 437.2 312 70.5
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.4e-120 437.2 327 66.4
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.4e-120 436.4 348 64.4
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 4.1e-120 435.6 385 60.3
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 4.1e-120 435.6 385 60.3
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 4.1e-120 435.6 385 60.3
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 9.2e-120 434.5 282 77.0
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 1.7e-118 430.3 265 80.0
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 8.6e-118 427.9 383 59.8
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.5e-117 426.4 371 61.2
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 4.3e-117 425.6 383 59.5
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 3.1e-107 392.9 389 54.8
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 2.0e-106 390.2 257 76.3
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.9e-102 375.9 280 66.4
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 4.9e-97 359.0 224 78.6
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.3e-94 350.1 281 68.3
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 1.6e-92 344.0 252 69.0
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-77 294.7 216 68.1
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 3.3e-77 293.1 201 74.1
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 9.6e-69 265.0 234 59.4
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 9.0e-67 258.5 192 70.3
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.5e-58 231.1 275 46.5
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 4.1e-51 206.5 228 51.8
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-48 198.4 149 65.1
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 9.4e-48 195.3 315 39.4
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 1.1e-45 188.3 157 61.1
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 4.1e-43 179.9 148 64.2
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 9.1e-43 178.7 157 58.6
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 4.2e-40 169.9 104 78.8
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.6e-39 166.8 100 80.0
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 3.9e-38 163.3 258 36.8
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 1.5e-37 161.4 101 72.3
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 1.7e-36 157.9 101 70.3
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 1.8e-35 154.5 153 52.3
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 5.3e-35 152.9 145 55.2
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 3.8e-33 146.7 100 69.0
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 2.5e-32 144.1 122 62.3
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 5.5e-32 142.9 77 81.8
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 1.0e-30 138.7 153 50.3
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.1e-27 126.7 135 51.1
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 7.0e-27 125.9 144 50.0
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.9e-26 122.9 76 69.7
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.4e-21 107.1 72 70.8
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 8.3e-20 102.4 106 52.8
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 7.0e-19 99.4 76 64.5
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.2e-15 88.6 50 86.0
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 1.1e-11 75.5 157 36.9
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 5.4e-11 73.2 49 69.4
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-08 65.5 70 51.4
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-08 65.5 70 51.4
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 5.6e-08 63.2 45 68.9


User provided reference genes

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