Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 6.7e-180 634.0 351 100.0
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.9e-98 362.8 299 57.9
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 8.7e-95 351.3 300 56.0
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.4e-91 339.3 299 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 5.7e-78 295.4 270 52.6
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 9.0e-76 288.1 294 48.3
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 2.2e-74 283.5 294 47.3
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 6.5e-74 282.0 294 49.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 6.5e-74 282.0 294 46.6
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 8.4e-74 281.6 288 50.0
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.4e-73 280.8 290 47.6
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.9e-73 280.4 299 47.2
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.5e-73 280.0 292 46.2
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 5.5e-73 278.9 299 45.5
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 7.1e-73 278.5 298 46.0
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 7.1e-73 278.5 294 45.9
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.7e-72 276.6 300 45.3
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.0e-71 274.6 299 45.2
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.3e-71 274.2 298 46.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.3e-71 274.2 293 46.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.8e-71 273.9 299 45.2
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.3e-71 273.5 295 47.1
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.9e-71 272.7 298 45.6
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 3.9e-71 272.7 299 45.5
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.5e-70 270.8 293 45.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-70 270.8 297 46.5
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.9e-70 270.4 293 46.4
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 3.3e-70 269.6 293 46.4
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.3e-70 269.6 298 46.0
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.3e-70 269.6 298 47.0
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 4.3e-70 269.2 293 46.1
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 4.3e-70 269.2 296 44.3
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.3e-69 267.7 293 45.4
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.6e-69 267.3 292 46.9
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.6e-69 267.3 293 45.1
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 3.7e-69 266.2 299 46.2
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 3.7e-69 266.2 293 44.7
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 4.8e-69 265.8 293 43.7
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 8.2e-69 265.0 297 42.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 8.2e-69 265.0 299 43.1
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.4e-68 264.2 292 46.2
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 2.4e-68 263.5 293 45.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.1e-68 262.7 293 44.0
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 5.3e-68 262.3 295 46.4
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 5.3e-68 262.3 295 46.4
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.9e-68 261.9 298 43.3
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 6.9e-68 261.9 293 44.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 6.9e-68 261.9 293 44.4
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 6.9e-68 261.9 292 45.2
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-67 261.2 295 46.1
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.2e-67 261.2 350 41.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-67 260.8 295 45.8
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 2.6e-67 260.0 291 45.7
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.6e-67 260.0 294 43.9
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.6e-67 260.0 296 43.9
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.6e-67 260.0 297 43.4
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.4e-67 259.6 304 44.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 3.4e-67 259.6 294 44.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 3.4e-67 259.6 294 44.2
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 3.4e-67 259.6 297 42.4
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 5.9e-67 258.8 294 43.9
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 5.9e-67 258.8 296 43.2
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 5.9e-67 258.8 298 43.6
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.0e-66 258.1 296 43.2
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.3e-66 257.7 297 44.4
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.3e-66 257.7 297 41.8
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.3e-66 257.7 294 43.5
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.7e-66 257.3 293 43.7
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.7e-66 257.3 297 42.4
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.9e-66 256.5 297 42.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.9e-66 256.5 294 42.5
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 3.8e-66 256.1 293 43.0
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 5.0e-66 255.8 294 43.5
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 5.0e-66 255.8 295 44.7
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 5.0e-66 255.8 307 44.6
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 6.5e-66 255.4 294 43.2
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.5e-66 255.4 294 43.9
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 8.5e-66 255.0 294 44.2
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.1e-65 254.6 295 43.1
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.4e-65 254.2 295 44.4
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 1.4e-65 254.2 300 42.3
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-65 253.8 293 42.0
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.9e-65 253.8 293 42.0
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.9e-65 253.8 294 43.9
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.2e-65 251.9 293 42.7
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 7.2e-65 251.9 294 43.9
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.4e-65 251.5 293 41.6
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 9.4e-65 251.5 293 43.0
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 9.4e-65 251.5 298 42.6
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.6e-64 250.8 293 41.6
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.6e-64 250.8 293 41.6
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 2.1e-64 250.4 297 42.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 2.1e-64 250.4 297 40.7
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.1e-64 250.4 293 41.3
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 2.7e-64 250.0 296 43.6
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 6.1e-64 248.8 297 41.1
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 6.1e-64 248.8 297 41.1
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-63 248.1 293 43.3
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.4e-63 247.7 318 40.6
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.0e-63 246.5 294 41.8
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 3.9e-63 246.1 294 42.2
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 6.7e-63 245.4 297 41.8
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 8.8e-63 245.0 298 41.3
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 8.8e-63 245.0 293 43.3
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.5e-62 244.2 332 39.8
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-62 243.8 294 41.8
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.5e-62 243.4 294 41.8
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.3e-61 241.1 313 42.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 4.1e-60 236.1 266 44.4
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 4.1e-60 236.1 301 40.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.5e-59 234.2 299 41.8
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.0e-59 233.8 293 41.3
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-58 231.5 293 41.6
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 3.6e-56 223.0 299 37.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.3e-55 220.3 297 41.4
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 3.9e-55 219.5 328 37.5
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.5e-54 217.6 293 39.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.6e-51 206.8 302 38.4
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 3.8e-50 203.0 353 34.3
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 5.0e-50 202.6 263 39.9
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 5.5e-49 199.1 265 38.5
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.4e-47 194.5 283 38.2
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 6.7e-47 192.2 252 37.7
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 7.4e-46 188.7 296 34.1
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.7e-45 187.6 253 37.2
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.5e-41 173.7 201 45.8
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 4.7e-40 169.5 301 34.9
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.8e-39 167.5 218 39.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.7e-37 161.0 203 43.8
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.0e-35 154.1 164 47.0
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 3.5e-35 153.3 262 32.8
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 9.4e-33 145.2 242 35.5
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 4.9e-21 106.3 84 56.0
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 5.0e-18 96.3 177 27.7
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 9.5e-17 92.0 116 42.2
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 3.1e-15 87.0 96 45.8
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-14 84.0 73 52.1
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 6.4e-13 79.3 75 48.0
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 5.4e-12 76.3 84 47.6
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 7.0e-12 75.9 118 28.8
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.6e-11 73.2 68 51.5
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 4.6e-11 73.2 91 41.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 4.6e-11 73.2 91 41.8
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 6.6e-10 69.3 66 47.0
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.3e-09 67.0 91 33.0
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 3.3e-09 67.0 58 50.0
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.6e-08 63.5 63 47.6
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.1e-07 62.0 66 39.4
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.1e-07 62.0 82 43.9
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 1.4e-07 61.6 59 50.8
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 2.0e-06 57.8 47 55.3


User provided reference genes

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