Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 4.2e-93 344.7 183 100.0
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 3.9e-46 188.7 156 64.7
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 5.1e-46 188.3 149 69.1
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 1.5e-45 186.8 167 60.5
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 3.3e-45 185.7 149 66.4
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 4.3e-45 185.3 149 67.1
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.6e-44 183.3 149 67.1
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 2.8e-44 182.6 173 57.2
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 3.6e-44 182.2 157 60.5
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 3.6e-44 182.2 167 59.9
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 3.6e-44 182.2 149 66.4
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 3.6e-44 182.2 163 60.1
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 4.7e-44 181.8 158 62.0
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 4.7e-44 181.8 149 63.8
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 8.1e-44 181.0 159 58.5
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.1e-43 180.6 150 64.7
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.4e-43 180.3 157 59.9
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.4e-43 180.3 149 64.4
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.8e-43 179.9 158 60.1
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 2.4e-43 179.5 165 61.2
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 2.4e-43 179.5 159 59.1
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.4e-43 179.5 163 60.1
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 2.4e-43 179.5 165 59.4
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 3.1e-43 179.1 157 59.2
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 3.1e-43 179.1 163 60.1
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 3.1e-43 179.1 159 59.1
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 5.2e-43 178.3 159 59.7
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.2e-43 178.3 158 58.9
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 5.2e-43 178.3 159 59.7
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 5.2e-43 178.3 162 60.5
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 6.9e-43 177.9 148 62.8
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 6.9e-43 177.9 149 61.7
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 6.9e-43 177.9 157 59.2
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 6.9e-43 177.9 164 59.8
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 6.9e-43 177.9 147 61.9
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 6.9e-43 177.9 149 60.4
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 6.9e-43 177.9 149 61.1
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 9.0e-43 177.6 174 58.0
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 9.0e-43 177.6 159 58.5
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 9.0e-43 177.6 166 58.4
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.2e-42 177.2 149 63.1
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 1.2e-42 177.2 149 61.7
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.5e-42 176.8 170 56.5
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 1.5e-42 176.8 149 62.4
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.5e-42 176.8 174 59.2
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 2.0e-42 176.4 159 57.9
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.6e-42 176.0 158 60.1
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 3.4e-42 175.6 166 57.2
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 3.4e-42 175.6 167 55.7
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 5.8e-42 174.9 149 61.1
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 5.8e-42 174.9 157 59.2
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 5.8e-42 174.9 167 56.3
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 7.6e-42 174.5 149 62.4
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 7.6e-42 174.5 148 62.8
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 7.6e-42 174.5 158 59.5
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 7.6e-42 174.5 147 61.2
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 7.6e-42 174.5 157 58.6
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 9.9e-42 174.1 156 59.0
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 9.9e-42 174.1 159 57.9
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 9.9e-42 174.1 158 58.2
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 9.9e-42 174.1 149 61.7
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 9.9e-42 174.1 165 55.8
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 1.3e-41 173.7 166 56.6
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 1.7e-41 173.3 149 60.4
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 1.7e-41 173.3 149 62.4
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.7e-41 173.3 149 59.7
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.2e-41 172.9 148 61.5
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.2e-41 172.9 150 61.3
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.9e-41 172.6 165 57.6
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 3.8e-41 172.2 148 61.5
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 4.9e-41 171.8 157 58.6
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 4.9e-41 171.8 149 61.1
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 4.9e-41 171.8 149 59.7
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 6.4e-41 171.4 149 60.4
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 6.4e-41 171.4 149 60.4
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 6.4e-41 171.4 159 57.2
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 6.4e-41 171.4 191 51.3
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 8.4e-41 171.0 161 59.6
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 8.4e-41 171.0 149 59.7
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 8.4e-41 171.0 148 60.1
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 1.1e-40 170.6 167 54.5
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.1e-40 170.6 157 56.7
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.4e-40 170.2 157 58.6
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 1.9e-40 169.9 157 58.0
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.9e-40 169.9 160 57.5
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.9e-40 169.9 149 59.1
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.4e-40 169.5 167 53.9
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 3.2e-40 169.1 149 59.7
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 5.4e-40 168.3 157 58.0
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.4e-40 168.3 163 55.8
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 5.4e-40 168.3 154 57.1
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 7.1e-40 167.9 149 59.1
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 7.1e-40 167.9 167 53.3
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 7.1e-40 167.9 149 57.0
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 9.3e-40 167.5 149 57.7
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.2e-39 167.2 157 57.3
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.2e-39 167.2 149 60.4
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.2e-39 167.2 149 59.1
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 1.6e-39 166.8 149 58.4
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 1.6e-39 166.8 149 61.1
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.6e-39 166.8 159 54.7
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.6e-39 166.8 159 56.0
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-39 166.4 149 57.7
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 4.6e-39 165.2 149 57.0
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 4.6e-39 165.2 149 58.4
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 6.0e-39 164.9 158 57.0
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 1.3e-38 163.7 163 57.1
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.7e-38 163.3 149 57.0
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.3e-38 162.9 149 60.4
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 2.3e-38 162.9 149 57.7
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.0e-38 162.5 149 58.4
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 8.7e-38 161.0 149 55.7
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.5e-37 159.5 148 52.0
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.3e-37 158.7 182 54.4
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.3e-37 158.7 161 54.0
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 5.6e-37 158.3 212 47.2
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.1e-36 156.4 134 57.5
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.0e-35 152.1 157 51.0
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.0e-34 149.8 149 57.0
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.2e-32 142.5 134 56.0
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 3.2e-32 142.5 115 62.6
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.0e-30 137.5 185 45.9
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 2.3e-30 136.3 121 54.5
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 1.1e-29 134.0 126 57.1
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 1.5e-29 133.7 164 48.2
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 3.3e-29 132.5 157 47.8
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 4.3e-29 132.1 122 55.7
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.6e-28 130.2 98 66.3
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 1.8e-27 126.7 157 49.7
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 3.1e-27 125.9 143 52.4
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.3e-27 125.2 158 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 2.0e-26 123.2 107 61.7
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 3.2e-24 115.9 168 41.1
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 7.9e-23 111.3 108 56.5
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.3e-22 109.8 108 57.4
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 2.5e-21 106.3 149 46.3
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 4.3e-21 105.5 99 57.6
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.3e-20 104.0 100 57.0
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 8.2e-20 101.3 136 39.0
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.8e-19 100.1 149 43.0
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 4.0e-19 99.0 99 57.6
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 9.0e-19 97.8 147 41.5
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.5e-18 95.5 67 70.1
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 4.6e-15 85.5 188 32.4
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 1.0e-14 84.3 92 52.2
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.0e-14 84.3 150 34.7
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.3e-14 84.0 85 58.8
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.8e-14 83.6 75 61.3
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 3.9e-14 82.4 191 31.4
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 5.1e-14 82.0 84 57.1
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 8.7e-14 81.3 58 63.8
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 1.9e-13 80.1 48 72.9
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 1.7e-09 67.0 60 58.3
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 1.7e-09 67.0 60 58.3
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 6.7e-06 55.1 112 37.5


User provided reference genes

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