Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.4e-157 559.7 298 100.0
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 5.9e-84 315.1 273 60.8
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.9e-82 310.1 282 57.1
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.8e-77 293.5 234 68.4
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.1e-73 280.0 283 54.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 7.9e-73 278.1 279 55.6
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 3.3e-71 272.7 269 55.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.3e-71 272.3 262 54.6
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-70 270.4 276 55.4
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 6.3e-70 268.5 267 53.6
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.1e-69 265.8 270 53.0
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.5e-68 263.8 235 60.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.0e-68 263.5 267 53.2
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.6e-68 263.1 281 50.5
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.6e-68 263.1 281 53.0
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.4e-68 262.7 273 53.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.4e-68 262.7 282 52.8
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 7.7e-68 261.5 263 52.9
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.0e-67 261.2 268 52.6
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.0e-67 261.2 277 52.7
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.3e-67 260.8 287 51.2
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.3e-67 260.8 291 50.9
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.7e-67 260.4 296 50.7
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.7e-67 260.4 271 53.9
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.7e-67 260.4 263 52.5
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.2e-67 260.0 263 52.5
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.9e-67 259.6 295 51.2
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.9e-67 259.6 271 53.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 2.9e-67 259.6 297 50.5
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 5.0e-67 258.8 263 51.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 6.5e-67 258.5 262 51.9
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 8.5e-67 258.1 262 53.4
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.1e-66 257.7 262 53.1
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.1e-66 257.7 263 52.9
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.4e-66 257.3 263 52.5
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-66 256.9 297 49.8
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.5e-66 256.5 273 51.3
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.2e-66 256.1 260 53.1
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.2e-66 256.1 260 53.1
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.2e-66 256.1 260 53.1
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.2e-66 256.1 271 51.7
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.2e-66 256.1 271 51.7
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 5.5e-66 255.4 263 51.0
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 5.5e-66 255.4 271 51.7
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 7.2e-66 255.0 262 53.1
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 7.2e-66 255.0 262 53.1
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 7.2e-66 255.0 262 53.1
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 7.2e-66 255.0 271 50.9
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 9.4e-66 254.6 270 52.2
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 9.4e-66 254.6 262 51.9
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 9.4e-66 254.6 267 51.7
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.2e-65 254.2 270 51.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.6e-65 253.8 260 52.7
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.6e-65 253.8 260 52.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.6e-65 253.8 264 53.4
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 2.1e-65 253.4 267 52.1
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.1e-65 253.4 271 50.9
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.1e-65 253.4 276 52.5
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 2.7e-65 253.1 283 49.8
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.7e-65 253.1 275 49.8
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.7e-65 253.1 261 52.9
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 3.6e-65 252.7 285 49.1
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 4.7e-65 252.3 267 52.1
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 4.7e-65 252.3 276 49.6
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.7e-65 252.3 262 51.9
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 6.1e-65 251.9 262 51.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.0e-64 251.1 260 52.3
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.0e-64 251.1 272 51.1
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.0e-64 251.1 270 50.7
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.0e-64 251.1 263 52.9
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.8e-64 250.4 262 52.3
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.8e-64 250.4 264 53.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.8e-64 250.4 272 50.0
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.8e-64 250.4 276 52.2
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.3e-64 250.0 262 51.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.3e-64 250.0 274 51.1
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.3e-64 250.0 272 51.5
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 3.0e-64 249.6 263 52.5
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 3.9e-64 249.2 263 53.6
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.9e-64 249.2 260 51.9
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.2e-64 248.8 287 47.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 8.8e-64 248.1 216 60.6
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.1e-63 247.7 263 52.9
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.0e-63 246.9 281 49.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.0e-63 246.9 281 49.1
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.6e-63 246.5 229 57.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.6e-63 246.5 195 61.0
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.4e-63 245.7 195 61.0
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 5.7e-63 245.4 216 57.9
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 5.7e-63 245.4 268 51.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 5.7e-63 245.4 263 52.5
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 7.4e-63 245.0 272 49.3
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 7.4e-63 245.0 263 49.8
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 9.7e-63 244.6 263 50.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 9.7e-63 244.6 217 59.4
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.3e-62 244.2 277 48.4
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.7e-62 243.8 290 46.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.2e-62 243.4 260 49.2
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.8e-62 243.0 273 51.3
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 4.8e-62 242.3 283 48.4
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.8e-62 242.3 195 60.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.1e-61 241.1 281 48.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-61 241.1 195 60.0
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.4e-61 240.7 262 50.4
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.4e-61 240.7 216 56.9
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.4e-61 240.7 262 50.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.8e-61 240.4 271 49.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 5.3e-61 238.8 263 50.6
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 7.0e-61 238.4 296 47.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 1.0e-59 234.6 271 49.4
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.3e-59 234.2 263 50.2
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.7e-59 233.8 230 54.3
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.2e-59 233.4 216 55.6
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.8e-59 232.6 266 49.6
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.1e-58 231.1 262 48.9
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 3.2e-58 229.6 232 52.6
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 5.2e-56 222.2 231 51.5
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-55 221.1 234 50.4
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.0e-55 220.3 284 48.6
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 4.4e-55 219.2 260 48.5
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 7.5e-55 218.4 234 50.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.2e-54 216.9 272 47.4
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 7.0e-53 211.8 209 52.6
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.3e-51 207.6 271 46.9
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-50 204.5 195 54.4
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.4e-45 187.6 192 52.6
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.4e-45 186.8 216 53.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 7.0e-45 185.3 271 41.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-39 167.9 177 54.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-35 154.1 218 46.8
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.0e-35 152.5 171 50.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.9e-34 150.6 156 53.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.8e-33 146.7 189 42.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.6e-33 146.4 224 41.1
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.0e-33 145.2 231 43.3
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-32 144.8 205 40.5
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.0e-32 142.9 157 51.6
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.9e-30 136.7 299 37.5
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-27 128.3 141 49.6
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.3e-24 117.1 92 63.0
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 5.8e-23 112.5 228 34.2
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.1e-21 108.2 227 34.8
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.9e-19 99.8 190 39.5
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-18 96.7 96 51.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.3e-18 96.7 96 51.0
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.3e-18 95.5 119 47.1
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-17 94.0 207 36.2
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.1e-17 92.0 67 62.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 8.1e-17 92.0 74 62.2
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.9e-16 88.6 58 67.2
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-15 88.2 57 68.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.5e-15 85.5 58 65.5
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.9e-14 83.6 91 51.6
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.2e-13 78.6 64 59.4
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-11 74.3 48 68.8
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 3.6e-09 66.6 52 57.7


User provided reference genes

Program Settings