Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.1e-184 649.8 321 100.0
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 2.2e-97 359.8 292 59.9
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 7.4e-93 344.7 276 62.3
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.3e-92 344.0 279 60.2
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.4e-91 339.7 293 60.8
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 5.3e-91 338.6 295 58.0
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 5.3e-91 338.6 294 61.6
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 5.3e-91 338.6 286 61.2
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 7.0e-91 338.2 300 54.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.5e-90 337.0 294 61.2
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.6e-90 336.3 291 57.4
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 3.5e-90 335.9 312 54.8
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 4.5e-90 335.5 284 59.5
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 5.9e-90 335.1 285 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.3e-89 334.0 249 65.1
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-89 334.0 284 59.5
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.7e-89 333.6 295 57.6
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 2.9e-89 332.8 284 58.5
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.9e-89 332.8 285 60.0
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 3.8e-89 332.4 275 61.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 6.5e-89 331.6 304 59.2
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 6.5e-89 331.6 286 59.8
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 8.5e-89 331.3 284 58.5
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 8.5e-89 331.3 286 58.7
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.1e-88 330.9 292 56.5
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.1e-88 330.9 286 59.1
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.1e-88 330.9 284 59.9
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.1e-88 330.9 284 58.8
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.4e-88 330.5 288 58.0
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 3.2e-88 329.3 293 57.3
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.2e-88 329.3 286 57.7
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 3.2e-88 329.3 286 57.7
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 4.2e-88 328.9 284 58.1
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 5.5e-88 328.6 293 57.3
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 7.2e-88 328.2 285 58.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 9.4e-88 327.8 303 54.8
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.1e-87 326.6 287 55.7
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.7e-87 326.2 295 56.9
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.7e-87 326.2 293 57.0
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 2.7e-87 326.2 286 58.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.6e-87 325.9 286 57.0
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 4.7e-87 325.5 284 58.1
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.7e-87 325.5 287 56.1
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 6.1e-87 325.1 287 55.7
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 8.0e-87 324.7 287 57.1
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 8.0e-87 324.7 284 58.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.0e-86 324.3 283 57.6
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.0e-86 324.3 297 56.6
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.8e-86 323.6 278 59.7
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.8e-86 323.6 292 56.8
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.8e-86 323.6 284 58.8
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.8e-86 323.6 293 57.3
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.3e-86 323.2 295 56.6
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.9e-86 322.4 279 56.6
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 5.2e-86 322.0 287 56.1
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 6.7e-86 321.6 293 54.9
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 8.8e-86 321.2 287 55.4
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.1e-85 320.9 312 54.8
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.1e-85 320.9 291 56.4
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.1e-85 320.9 281 56.6
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.1e-85 320.9 273 57.5
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.5e-85 320.5 279 57.0
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.0e-85 320.1 276 58.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.6e-85 319.7 293 56.3
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.6e-85 319.7 293 57.3
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.3e-85 319.3 293 56.7
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 5.7e-85 318.5 285 54.7
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 9.7e-85 317.8 308 54.5
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.3e-84 317.4 281 56.2
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.7e-84 317.0 292 55.8
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.7e-84 317.0 284 56.0
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 2.8e-84 316.2 250 62.0
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.8e-84 316.2 304 56.9
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.7e-84 315.8 291 54.6
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.7e-84 315.8 291 54.6
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 3.7e-84 315.8 287 54.7
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 4.8e-84 315.5 288 55.9
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 6.3e-84 315.1 276 56.9
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 6.3e-84 315.1 284 56.0
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.3e-84 315.1 284 56.0
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.3e-84 315.1 294 56.1
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 6.3e-84 315.1 286 57.7
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 8.2e-84 314.7 298 55.4
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 8.2e-84 314.7 284 56.0
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.4e-83 313.9 283 56.5
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.4e-83 313.2 284 55.6
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.4e-83 313.2 276 56.5
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.1e-83 312.4 291 54.3
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 5.3e-83 312.0 293 52.9
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 9.1e-83 311.2 289 54.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.2e-82 310.8 279 55.2
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 2.6e-82 309.7 335 51.0
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 5.9e-82 308.5 281 54.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 5.9e-82 308.5 249 60.6
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.0e-81 307.8 287 52.6
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.0e-81 307.8 268 60.8
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 2.9e-81 306.2 285 55.8
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.5e-81 304.7 291 54.0
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.1e-80 304.3 276 58.3
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.9e-80 303.5 336 48.5
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.9e-80 303.5 336 48.5
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.9e-80 303.5 299 55.5
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 3.2e-80 302.8 331 49.8
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.6e-79 300.4 246 61.4
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.8e-78 297.0 255 60.0
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 6.8e-78 295.0 255 58.0
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.4e-77 292.4 312 51.6
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 8.3e-76 288.1 246 59.8
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 8.3e-76 288.1 284 53.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.1e-75 287.7 279 53.8
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 7.7e-74 281.6 224 61.2
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.0e-70 271.2 284 51.1
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 8.8e-70 268.1 223 61.4
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 5.7e-69 265.4 286 52.4
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.3e-68 264.2 273 50.9
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 3.7e-68 262.7 294 47.6
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 4.1e-67 259.2 268 51.9
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.3e-57 227.6 250 48.4
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 2.3e-57 226.9 281 43.4
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.2e-55 221.1 284 45.1
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.3e-54 216.9 190 57.9
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 5.8e-53 212.2 178 60.1
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.9e-49 199.5 248 48.4
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.6e-42 177.6 279 36.9
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.7e-36 157.5 141 58.2
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 3.7e-36 156.4 111 64.0
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.4e-35 153.7 161 50.9
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 7.1e-35 152.1 375 30.4
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 2.7e-34 150.2 113 62.8
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 3.0e-33 146.7 163 48.5
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 8.6e-33 145.2 161 49.1
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 6.2e-31 139.0 148 50.7
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-30 137.9 240 36.7
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.4e-29 133.3 157 47.8
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.0e-17 95.1 60 71.7
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 7.3e-16 89.0 97 50.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 6.2e-15 85.9 91 50.5
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.4e-14 84.7 92 50.0
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 4.0e-14 83.2 179 30.7
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 7.6e-13 79.0 198 29.3
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 8.4e-12 75.5 62 56.5
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 7.1e-11 72.4 92 44.6
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.3e-11 72.0 71 50.7
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.9e-09 66.6 47 63.8
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.7e-09 65.9 47 63.8
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.7e-09 65.9 47 63.8
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 8.7e-09 65.5 40 72.5
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.3e-08 63.2 37 78.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 6.2e-07 59.3 42 61.9
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 8.1e-07 58.9 68 48.5
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 8.1e-07 58.9 68 48.5
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-06 58.5 47 57.4
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 2.4e-06 57.4 42 61.9
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 4.0e-06 56.6 49 49.0


User provided reference genes

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