Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 0.0e+00 1834.7 905 100.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.8e-277 959.5 880 55.2
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 2.5e-255 885.9 901 50.5
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 2.8e-254 882.5 889 50.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 6.2e-254 881.3 888 51.1
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.1e-253 880.6 891 51.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 4.0e-253 878.6 895 50.1
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 4.5e-252 875.2 887 51.3
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 4.5e-252 875.2 896 50.3
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 9.9e-252 874.0 889 50.8
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 4.9e-251 871.7 885 50.4
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.1e-250 870.5 894 50.4
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.9e-250 869.8 884 50.0
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.9e-250 869.8 888 50.1
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 7.1e-250 867.8 886 49.4
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 7.1e-250 867.8 896 50.0
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 7.1e-250 867.8 895 50.1
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 2.1e-249 866.3 887 51.0
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 2.7e-249 865.9 886 49.3
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 2.7e-249 865.9 894 50.1
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 3.5e-249 865.5 899 50.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 3.5e-249 865.5 891 49.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 3.5e-249 865.5 891 49.6
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 4.6e-249 865.1 894 48.7
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 6.0e-249 864.8 893 49.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 1.0e-248 864.0 884 49.3
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 1.8e-248 863.2 887 49.6
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.8e-248 863.2 881 49.5
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 2.3e-248 862.8 902 50.1
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 3.0e-248 862.4 887 49.9
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 3.0e-248 862.4 893 50.5
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 3.9e-248 862.1 887 50.1
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 3.9e-248 862.1 894 50.6
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 6.7e-248 861.3 892 49.8
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 8.7e-248 860.9 894 49.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 1.1e-247 860.5 898 50.1
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.5e-247 859.4 891 50.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 2.5e-247 859.4 891 50.6
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 4.3e-247 858.6 889 48.9
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 5.6e-247 858.2 909 49.2
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 9.6e-247 857.4 898 49.3
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.3e-246 857.1 887 49.8
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.6e-246 856.7 880 50.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 1.6e-246 856.7 907 49.4
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 2.1e-246 856.3 885 49.5
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.1e-246 856.3 891 49.5
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 2.8e-246 855.9 890 50.6
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 3.7e-246 855.5 891 49.4
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 4.8e-246 855.1 892 49.1
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 6.2e-246 854.7 890 50.1
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 6.2e-246 854.7 894 50.0
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 8.1e-246 854.4 895 49.9
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.8e-245 853.2 891 50.8
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.8e-245 853.2 891 49.8
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.8e-245 853.2 896 49.7
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.1e-245 852.4 896 49.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 4.0e-245 852.0 886 49.7
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.0e-245 852.0 892 49.1
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 4.0e-245 852.0 896 48.3
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 5.3e-245 851.7 890 50.4
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 1.2e-244 850.5 889 48.9
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 1.2e-244 850.5 892 49.0
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 1.2e-244 850.5 888 49.4
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 2.0e-244 849.7 887 48.8
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 7.6e-244 847.8 898 48.2
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 3.8e-243 845.5 892 49.4
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 3.8e-243 845.5 886 49.1
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 4.9e-243 845.1 904 49.0
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.9e-242 843.2 888 49.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 3.2e-242 842.4 886 48.8
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 7.1e-242 841.3 909 48.0
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 2.3e-240 836.3 889 47.2
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 3.9e-240 835.5 895 48.8
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.9e-239 833.2 925 48.0
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 2.5e-239 832.8 887 47.5
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 4.3e-239 832.0 889 47.2
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 1.6e-238 830.1 886 48.4
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 3.7e-238 828.9 906 48.9
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 6.2e-238 828.2 887 47.4
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 1.4e-237 827.0 886 49.9
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 1.2e-236 823.9 889 47.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 2.6e-236 822.8 891 47.3
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 2.6e-236 822.8 792 52.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 3.4e-236 822.4 891 47.4
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 5.8e-236 821.6 889 47.0
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 7.6e-236 821.2 888 47.5
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 7.6e-236 821.2 887 47.1
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 4.9e-235 818.5 890 47.3
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 8.4e-235 817.8 890 47.0
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.9e-234 816.6 889 47.6
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 7.1e-234 814.7 889 47.0
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 5.1e-232 808.5 1017 44.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.5e-231 807.0 891 46.9
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.2e-226 789.3 817 50.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.3e-223 779.2 791 51.1
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 9.1e-221 771.2 888 46.5
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 3.4e-220 769.2 901 46.4
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 6.5e-219 765.0 887 45.2
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 6.5e-219 765.0 810 48.5
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 7.2e-210 734.9 682 54.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 6.3e-206 721.8 883 45.2
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.4e-184 651.0 657 49.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.7e-180 636.7 619 52.3
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 5.4e-157 559.3 887 37.7
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 8.6e-155 552.0 883 36.5
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.4e-112 411.8 442 48.2
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 7.2e-109 399.4 479 43.6
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 5.7e-106 389.8 1032 30.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 3.7e-105 387.1 1182 27.9
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.1e-104 384.0 388 48.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 4.1e-104 383.6 443 45.8
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 7.0e-96 356.3 365 46.8
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 8.8e-91 339.3 820 31.1
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 5.0e-86 323.6 322 52.5
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.5e-85 321.2 273 57.5
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.6e-84 317.4 274 55.8
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.5e-66 256.5 204 57.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 3.5e-63 247.7 192 63.0
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 3.9e-62 244.2 511 34.8
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.6e-60 237.7 229 50.7
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 8.9e-59 233.0 209 55.0
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.2e-57 228.4 304 42.8
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 2.5e-53 214.9 319 39.2
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.2e-48 198.0 230 45.7
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.2e-44 186.0 244 41.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.4e-40 171.8 153 53.6
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 5.2e-35 154.1 213 39.9
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 6.2e-28 130.6 193 42.0
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 4.0e-27 127.9 186 39.2
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 4.0e-27 127.9 186 39.2
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.1e-23 115.5 100 56.0
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 7.9e-23 113.6 125 46.4
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.8e-19 102.4 67 67.2
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 5.3e-19 100.9 89 55.1
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-18 99.8 91 53.8
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.9e-17 95.1 65 66.2
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 7.1e-16 90.5 64 60.9
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 2.8e-12 78.6 80 50.0
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 6.2e-12 77.4 55 63.6
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.0e-11 73.6 67 58.2
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 7.6e-10 70.5 82 43.9
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.0e-09 70.1 126 34.9
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.9e-09 68.6 111 36.0
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 9.3e-08 63.5 107 31.8
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 3.5e-07 61.6 101 32.7
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 6.0e-07 60.8 40 52.5
Cc10_g05270 Coffea canephora HOM05D002634 ORTHO05D003100 3.0e-06 58.5 99 32.3
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 6.7e-06 57.4 61 36.1
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 8.7e-06 57.0 122 33.6
Prupe.1G428200 Prunus persica HOM05D002634 ORTHO05D003100 8.7e-06 57.0 110 33.6


User provided reference genes

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