Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.2e-204 717.2 689 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 3.0e-59 234.2 131 87.8
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.8e-57 226.9 131 83.2
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.8e-57 226.9 131 83.2
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 4.1e-56 223.8 131 82.4
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.2e-55 222.2 131 83.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.2e-55 222.2 131 83.2
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.2e-55 222.2 131 83.2
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.2e-55 222.2 131 83.2
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.2e-55 222.2 131 81.7
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.6e-55 221.9 131 82.4
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 2.7e-55 221.1 131 82.4
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 3.5e-55 220.7 131 82.4
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 4.5e-55 220.3 131 81.7
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 5.9e-55 219.9 129 82.9
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 7.7e-55 219.5 131 83.2
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 7.7e-55 219.5 131 81.7
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 7.7e-55 219.5 131 81.7
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 7.7e-55 219.5 131 81.7
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 7.7e-55 219.5 131 81.7
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.0e-54 219.2 131 80.9
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.0e-54 219.2 129 83.7
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.3e-54 218.8 131 80.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.3e-54 218.8 131 80.9
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.7e-54 218.4 131 80.9
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.3e-54 218.0 131 80.9
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.3e-54 218.0 131 81.7
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.3e-54 218.0 131 81.7
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 2.3e-54 218.0 131 80.9
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 3.8e-54 217.2 131 81.7
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.8e-54 217.2 131 80.9
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.8e-54 217.2 131 82.4
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 5.0e-54 216.9 131 80.2
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 5.0e-54 216.9 131 80.9
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 6.5e-54 216.5 131 82.4
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 8.6e-54 216.1 131 80.2
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 8.6e-54 216.1 131 80.2
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 2.5e-53 214.5 131 80.2
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 3.3e-53 214.2 131 79.4
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 3.3e-53 214.2 131 81.7
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 3.3e-53 214.2 131 79.4
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 4.2e-53 213.8 131 79.4
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 4.2e-53 213.8 131 78.6
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 5.5e-53 213.4 131 78.6
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 9.5e-53 212.6 131 80.2
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 9.5e-53 212.6 131 79.4
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 9.5e-53 212.6 131 78.6
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.2e-52 212.2 131 77.9
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.2e-52 212.2 131 79.4
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.2e-52 212.2 129 80.6
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.6e-52 211.8 131 79.4
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.1e-52 211.5 131 77.9
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.1e-52 211.5 131 78.6
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 2.1e-52 211.5 131 78.6
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.8e-52 211.1 131 77.9
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.8e-52 211.1 131 77.1
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 3.6e-52 210.7 131 77.9
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 3.6e-52 210.7 131 77.9
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 3.6e-52 210.7 131 77.9
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 3.6e-52 210.7 129 78.3
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 3.6e-52 210.7 131 80.2
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 3.6e-52 210.7 131 78.6
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 4.7e-52 210.3 131 77.9
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 4.7e-52 210.3 131 77.1
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 4.7e-52 210.3 131 77.9
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 4.7e-52 210.3 129 77.5
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 6.1e-52 209.9 129 77.5
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 8.0e-52 209.5 131 77.9
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 8.0e-52 209.5 129 77.5
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 8.0e-52 209.5 131 77.1
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.0e-51 209.1 131 77.1
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.0e-51 209.1 131 76.3
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.4e-51 208.8 131 76.3
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.4e-51 208.8 131 77.9
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.8e-51 208.4 132 78.0
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.8e-51 208.4 129 77.5
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.8e-51 208.4 131 77.1
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.3e-51 208.0 131 76.3
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.0e-51 207.6 132 78.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.0e-51 207.6 132 78.8
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 3.0e-51 207.6 131 77.9
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 3.0e-51 207.6 131 77.9
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 4.0e-51 207.2 131 76.3
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 4.0e-51 207.2 131 77.1
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 4.0e-51 207.2 129 76.7
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 4.0e-51 207.2 129 76.0
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 5.2e-51 206.8 131 77.9
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 5.2e-51 206.8 131 76.3
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 6.8e-51 206.5 131 77.1
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 6.8e-51 206.5 131 75.6
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 8.9e-51 206.1 129 76.0
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 8.9e-51 206.1 131 76.3
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.5e-50 205.3 129 76.7
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.5e-50 205.3 129 76.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 2.0e-50 204.9 131 75.6
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.6e-50 204.5 131 75.6
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 2.6e-50 204.5 131 75.6
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.6e-50 204.5 131 74.8
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 3.4e-50 204.1 131 74.8
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 5.7e-50 203.4 131 75.6
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 9.8e-50 202.6 129 75.2
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.3e-49 202.2 129 75.2
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 8.3e-49 199.5 125 79.2
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 8.3e-49 199.5 129 74.4
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 2.0e-47 194.9 125 77.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 3.5e-47 194.1 144 68.8
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.0e-46 192.6 139 69.8
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 3.8e-46 190.7 157 63.7
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.9e-45 188.3 112 83.0
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 8.9e-43 179.5 164 57.9
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 1.2e-39 169.1 134 62.7
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 3.9e-38 164.1 131 64.1
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 6.2e-36 156.8 101 75.2
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.3e-33 149.1 87 82.8
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 2.9e-33 147.9 92 75.0
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 3.9e-30 137.5 89 74.2
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 3.6e-28 131.0 115 56.5
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.1e-27 129.4 131 55.0
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 2.4e-24 118.2 150 46.0
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 9.2e-24 116.3 129 51.2
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 5.1e-22 110.5 93 59.1
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 8.6e-22 109.8 113 49.6
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 7.8e-15 86.7 54 74.1
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.0e-14 86.3 102 51.0
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 2.3e-14 85.1 52 76.9
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 5.2e-11 73.9 48 72.9
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 8.4e-09 66.6 108 36.1
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 6.0e-07 60.5 37 78.4


User provided reference genes

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