Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.3e-103 379.8 195 100.0
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 4.9e-47 191.8 193 49.7
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.2e-46 189.1 195 50.8
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-45 187.2 195 50.3
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.1e-45 186.4 192 50.5
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 2.7e-45 186.0 192 50.5
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.7e-45 186.0 192 50.0
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 2.7e-45 186.0 194 50.0
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 3.5e-45 185.7 192 50.0
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 6.0e-45 184.9 195 49.7
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 7.8e-45 184.5 190 51.6
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.3e-44 183.7 191 49.7
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.3e-44 183.0 192 49.5
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.3e-44 183.0 195 48.7
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 3.9e-44 182.2 187 51.9
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 3.9e-44 182.2 189 51.3
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.9e-44 182.2 185 50.3
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 8.6e-44 181.0 192 47.9
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 8.6e-44 181.0 190 47.9
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 1.9e-43 179.9 192 47.9
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.9e-43 179.9 194 50.5
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 4.3e-43 178.7 195 49.2
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 5.6e-43 178.3 192 49.0
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 5.6e-43 178.3 188 49.5
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 5.6e-43 178.3 192 48.4
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 5.6e-43 178.3 192 47.9
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 7.3e-43 177.9 195 48.2
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 9.5e-43 177.6 189 50.3
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 9.5e-43 177.6 185 48.6
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.6e-42 176.8 187 48.7
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 1.6e-42 176.8 194 48.5
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 3.6e-42 175.6 194 49.0
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 4.7e-42 175.3 193 46.1
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 4.7e-42 175.3 195 47.7
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 4.7e-42 175.3 190 48.4
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 6.2e-42 174.9 190 48.4
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.1e-41 174.1 190 46.8
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 1.4e-41 173.7 191 49.2
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.4e-41 173.7 193 48.7
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.4e-41 173.7 190 49.5
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 2.4e-41 172.9 187 47.1
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.1e-41 172.6 193 48.7
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 3.1e-41 172.6 190 46.8
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 3.1e-41 172.6 195 48.7
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 3.1e-41 172.6 194 48.5
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 4.0e-41 172.2 189 47.6
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 5.2e-41 171.8 196 43.9
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 6.8e-41 171.4 195 46.2
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 6.8e-41 171.4 187 47.1
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 8.9e-41 171.0 150 55.3
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.2e-40 170.6 194 45.9
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 1.2e-40 170.6 195 45.6
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.2e-40 170.6 191 46.6
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.5e-40 170.2 195 47.7
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 2.6e-40 169.5 191 46.6
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 4.4e-40 168.7 195 46.2
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.8e-40 168.3 150 54.7
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 7.6e-40 167.9 195 46.2
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 7.6e-40 167.9 192 46.4
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 9.9e-40 167.5 195 45.6
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 9.9e-40 167.5 195 46.2
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 9.9e-40 167.5 195 46.2
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 9.9e-40 167.5 156 51.9
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 9.9e-40 167.5 195 45.6
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 1.3e-39 167.2 194 46.9
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.3e-39 167.2 192 45.3
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.7e-39 166.8 194 45.9
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 2.2e-39 166.4 194 44.8
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 2.2e-39 166.4 188 45.7
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 2.9e-39 166.0 195 46.2
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 2.9e-39 166.0 192 46.4
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 3.8e-39 165.6 196 45.9
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 3.8e-39 165.6 192 45.3
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 4.9e-39 165.2 195 45.6
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 4.9e-39 165.2 187 46.0
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 6.4e-39 164.9 187 47.6
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 6.4e-39 164.9 212 43.9
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 6.4e-39 164.9 192 45.8
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 8.4e-39 164.5 195 46.7
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.1e-38 164.1 191 42.4
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 1.1e-38 164.1 191 45.5
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 1.4e-38 163.7 195 44.1
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.9e-38 163.3 195 46.7
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.9e-38 163.3 189 46.0
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 7.1e-38 161.4 187 46.0
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 7.1e-38 161.4 195 46.2
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.2e-37 160.6 193 42.5
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.0e-36 157.5 200 43.5
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 3.0e-36 156.0 245 37.6
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 8.6e-36 154.5 184 45.1
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 7.3e-35 151.4 187 43.3
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.6e-34 150.2 191 40.3
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.6e-34 150.2 202 43.1
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.7e-34 148.7 236 37.7
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.4e-33 147.1 154 48.7
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.2e-32 144.1 146 50.0
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 1.5e-32 143.7 188 43.1
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 7.6e-32 141.4 122 57.4
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 9.3e-30 134.4 143 50.3
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.2e-29 134.0 190 41.1
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 1.0e-28 131.0 190 40.5
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 1.1e-27 127.5 226 36.7
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.5e-27 127.1 159 44.7
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 5.6e-27 125.2 147 44.9
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 5.6e-27 125.2 294 30.6
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 6.2e-26 121.7 191 38.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 6.2e-26 121.7 148 44.6
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 4.0e-25 119.0 112 55.4
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 7.6e-24 114.8 101 57.4
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.1e-22 110.9 148 40.5
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 2.4e-22 109.8 339 27.7
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 1.0e-20 104.4 96 53.1
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 1.3e-20 104.0 122 43.4
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.9e-20 102.4 124 45.2
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 3.9e-20 102.4 90 54.4
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 6.7e-20 101.7 90 54.4
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 9.6e-19 97.8 197 35.0
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 3.8e-15 85.9 77 53.2
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.6e-13 80.5 121 38.0
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.1e-11 74.3 73 46.6
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.5e-11 73.9 191 30.4
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 1.3e-10 70.9 191 30.9
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.1e-10 70.1 127 34.6
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 4.5e-08 62.4 145 31.7
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.3e-07 60.8 53 54.7
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.3e-07 60.8 53 54.7
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 1.3e-07 60.8 53 54.7
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 1.4e-06 57.4 59 50.8
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.9e-06 57.0 60 48.3
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 3.2e-06 56.2 70 41.4


User provided reference genes

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