Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.1e-107 393.3 195 100.0
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 4.9e-55 218.4 198 51.0
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 8.3e-55 217.6 180 58.3
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 9.2e-54 214.2 187 55.6
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.2e-53 213.8 181 54.7
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 4.6e-53 211.8 180 54.4
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 6.0e-53 211.5 182 56.0
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 3.0e-52 209.1 183 53.6
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.0e-52 209.1 196 51.5
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 5.0e-52 208.4 181 54.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 6.6e-52 208.0 198 50.0
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 6.6e-52 208.0 181 51.9
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 6.6e-52 208.0 196 51.0
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 8.6e-52 207.6 179 55.3
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 8.6e-52 207.6 183 53.6
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.5e-51 206.8 187 49.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 1.5e-51 206.8 198 50.0
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.5e-51 206.8 181 53.0
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.9e-51 206.5 198 51.0
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 4.3e-51 205.3 181 52.5
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 7.3e-51 204.5 195 49.2
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 7.3e-51 204.5 198 51.0
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.3e-51 204.5 181 52.5
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.5e-51 204.1 198 51.0
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.2e-50 203.8 181 51.4
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.2e-50 203.8 181 51.4
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.2e-50 203.8 181 51.4
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.6e-50 203.4 198 49.5
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.6e-50 203.4 181 51.4
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.1e-50 203.0 183 49.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 2.1e-50 203.0 182 53.3
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 2.1e-50 203.0 180 54.4
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.1e-50 203.0 181 53.0
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.1e-50 203.0 181 53.0
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 2.1e-50 203.0 198 50.0
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 2.1e-50 203.0 180 53.3
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.6e-50 202.2 183 51.9
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 3.6e-50 202.2 181 52.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.6e-50 202.2 198 52.0
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.7e-50 201.8 187 49.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 4.7e-50 201.8 198 48.5
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 4.7e-50 201.8 198 50.0
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 4.7e-50 201.8 199 47.7
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 4.7e-50 201.8 198 49.5
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 6.2e-50 201.4 198 49.5
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 6.2e-50 201.4 180 52.2
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 6.2e-50 201.4 198 51.0
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 6.2e-50 201.4 185 50.3
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 8.1e-50 201.1 198 50.5
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 8.1e-50 201.1 198 50.5
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 8.1e-50 201.1 198 49.0
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 8.1e-50 201.1 198 50.0
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 8.1e-50 201.1 198 49.0
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-49 200.7 179 53.6
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.1e-49 200.7 180 51.1
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.1e-49 200.7 180 51.1
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.4e-49 200.3 187 50.3
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.4e-49 200.3 198 49.5
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.8e-49 199.9 198 49.5
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.8e-49 199.9 198 49.0
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.8e-49 199.9 198 48.0
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.8e-49 199.9 182 51.1
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.3e-49 199.5 197 50.3
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.1e-49 199.1 187 50.8
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.1e-49 199.1 198 49.5
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 3.1e-49 199.1 198 49.0
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 3.1e-49 199.1 198 49.0
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 3.1e-49 199.1 187 50.8
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.1e-49 199.1 181 50.8
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 3.1e-49 199.1 181 48.6
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 3.1e-49 199.1 197 49.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 5.2e-49 198.4 198 50.0
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 5.2e-49 198.4 187 49.2
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 5.2e-49 198.4 181 51.9
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.8e-49 198.0 198 49.0
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.2e-48 197.2 198 48.5
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.5e-48 196.8 181 49.7
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.0e-48 196.4 198 49.0
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.0e-48 196.4 198 49.0
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 2.0e-48 196.4 198 48.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 2.6e-48 196.1 197 48.2
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.6e-48 196.1 181 51.4
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.4e-48 195.3 187 50.3
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.5e-48 194.5 198 48.0
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.5e-48 194.5 180 52.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 1.3e-47 193.7 198 48.5
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.7e-47 193.4 189 48.7
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.7e-47 193.4 184 48.9
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.7e-47 193.4 176 52.8
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.9e-47 192.6 180 50.6
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.9e-47 192.6 181 48.6
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.7e-47 192.2 197 46.2
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.7e-47 192.2 181 49.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.9e-47 191.8 181 49.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 4.9e-47 191.8 197 47.7
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 4.9e-47 191.8 198 47.0
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 4.9e-47 191.8 198 48.0
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 8.3e-47 191.0 198 46.5
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 8.3e-47 191.0 180 50.0
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 1.1e-46 190.7 196 48.0
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.4e-46 190.3 199 46.7
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.9e-46 189.9 181 49.7
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.4e-46 189.5 187 48.1
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 2.4e-46 189.5 187 51.3
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.4e-46 189.5 187 48.1
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 4.1e-46 188.7 198 46.5
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 4.1e-46 188.7 187 49.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 4.1e-46 188.7 198 46.5
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 7.1e-46 188.0 198 45.5
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 7.1e-46 188.0 181 48.6
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 9.2e-46 187.6 182 51.1
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 2.1e-45 186.4 198 46.0
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.7e-45 186.0 180 48.9
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 2.7e-45 186.0 198 48.0
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.0e-44 184.1 198 45.5
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.0e-44 184.1 198 45.5
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.0e-44 184.1 198 45.5
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 5.1e-44 181.8 198 45.5
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.1e-43 180.6 196 44.9
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.5e-40 170.2 179 45.8
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 5.8e-40 168.3 144 50.7
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 9.9e-40 167.5 179 43.6
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 1.7e-39 166.8 151 51.7
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 6.4e-39 164.9 139 53.2
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 8.4e-39 164.5 140 52.9
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 1.2e-37 160.6 140 50.0
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 1.6e-37 160.2 178 44.4
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.0e-36 157.5 114 59.6
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 2.5e-35 152.9 170 44.1
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.1e-33 146.0 169 43.2
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 7.6e-32 141.4 194 36.6
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 2.9e-31 139.4 126 50.8
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 4.2e-30 135.6 154 42.9
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.2e-29 134.0 179 39.7
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 3.0e-28 129.4 184 38.6
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.3e-26 124.0 186 40.9
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 2.1e-26 123.2 190 39.5
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 6.2e-26 121.7 199 38.7
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 2.0e-24 116.7 118 49.2
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 7.1e-22 108.2 117 51.3
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 7.9e-21 104.8 107 52.3
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.8e-20 103.6 74 60.8
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 9.6e-19 97.8 109 45.9
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.6e-16 89.7 85 50.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.5e-16 89.0 71 52.1
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 4.6e-13 79.0 136 38.2
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 3.7e-10 69.3 105 37.1
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.6e-08 63.2 63 42.9
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 6.5e-07 58.5 62 43.5
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 3.2e-06 56.2 192 27.6


User provided reference genes

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