Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 4.9e-120 434.5 221 100.0
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 9.5e-39 164.5 149 60.4
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.8e-37 160.2 124 60.5
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 5.7e-36 155.2 144 53.5
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 9.2e-34 147.9 139 54.0
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 2.3e-32 143.3 158 48.7
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 8.6e-32 141.4 172 44.8
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.9e-31 140.2 140 49.3
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 1.9e-31 140.2 132 52.3
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 2.5e-31 139.8 133 50.4
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 4.3e-31 139.0 143 49.0
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 7.3e-31 138.3 152 44.7
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 7.3e-31 138.3 143 49.0
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 9.5e-31 137.9 129 51.2
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 9.5e-31 137.9 136 49.3
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.6e-30 137.1 143 49.7
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 2.1e-30 136.7 141 50.4
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.8e-30 136.3 141 49.6
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 3.6e-30 136.0 205 42.0
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 3.6e-30 136.0 141 49.6
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 4.7e-30 135.6 133 51.9
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 6.2e-30 135.2 127 52.8
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 6.2e-30 135.2 142 51.4
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 8.0e-30 134.8 145 46.9
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 8.0e-30 134.8 134 47.0
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 8.0e-30 134.8 134 47.0
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.0e-29 134.4 132 51.5
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.0e-29 134.4 132 51.5
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.4e-29 134.0 132 50.0
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.8e-29 133.7 127 52.0
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.8e-29 133.7 144 47.9
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 2.3e-29 133.3 135 47.4
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 2.3e-29 133.3 222 39.6
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 4.0e-29 132.5 125 50.4
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 5.2e-29 132.1 157 47.1
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 8.9e-29 131.3 142 50.0
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 8.9e-29 131.3 224 37.9
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 8.9e-29 131.3 159 45.9
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 1.5e-28 130.6 153 45.8
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.0e-28 130.2 133 47.4
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 2.0e-28 130.2 168 43.5
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 2.0e-28 130.2 125 49.6
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 2.6e-28 129.8 141 46.8
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 2.6e-28 129.8 124 50.0
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 3.4e-28 129.4 142 46.5
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 4.4e-28 129.0 140 46.4
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 4.4e-28 129.0 117 52.1
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 5.8e-28 128.6 150 44.0
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 5.8e-28 128.6 151 46.4
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 5.8e-28 128.6 137 46.7
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 7.5e-28 128.3 130 50.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 7.5e-28 128.3 140 45.7
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.3e-27 127.5 158 43.7
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 2.2e-27 126.7 147 45.6
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 2.2e-27 126.7 124 50.0
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 2.2e-27 126.7 124 50.0
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 2.2e-27 126.7 155 43.9
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 2.9e-27 126.3 132 47.7
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 4.9e-27 125.6 125 48.8
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 6.4e-27 125.2 143 45.5
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.1e-26 124.4 117 48.7
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.4e-26 124.0 145 42.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.9e-26 123.6 127 49.6
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 5.4e-26 122.1 133 48.1
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 9.2e-26 121.3 135 42.2
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 9.2e-26 121.3 135 42.2
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.2e-25 120.9 130 51.5
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.6e-25 120.6 132 41.7
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 1.6e-25 120.6 136 42.6
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.0e-25 120.2 125 47.2
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 2.0e-25 120.2 139 43.2
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 3.5e-25 119.4 127 48.8
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 4.6e-25 119.0 181 40.3
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.6e-25 119.0 102 50.0
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 4.6e-25 119.0 156 41.7
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 4.6e-25 119.0 130 50.8
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 6.0e-25 118.6 140 42.9
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.0e-24 117.9 132 40.9
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.0e-24 117.9 131 45.0
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 1.7e-24 117.1 118 50.8
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 1.7e-24 117.1 107 46.7
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 2.3e-24 116.7 123 45.5
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 2.3e-24 116.7 158 40.5
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 3.0e-24 116.3 110 45.5
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.1e-23 114.4 138 42.8
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 1.5e-23 114.0 108 47.2
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.3e-23 112.5 114 49.1
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 9.5e-23 111.3 109 46.8
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 9.5e-23 111.3 111 49.5
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 2.1e-22 110.2 119 42.9
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 3.6e-22 109.4 138 41.3
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 8.1e-22 108.2 138 40.6
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 2.0e-20 103.6 98 48.0
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.4e-18 97.4 100 49.0
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.7e-17 93.2 175 33.1
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.7e-16 90.5 200 32.0
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 2.3e-16 90.1 144 36.8
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 3.9e-16 89.4 128 38.3
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 1.1e-15 87.8 96 46.9
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 1.1e-15 87.8 73 53.4
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 3.3e-15 86.3 191 34.0
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 4.3e-15 85.9 113 44.2
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 7.3e-15 85.1 108 42.6
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 9.5e-15 84.7 128 39.1
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.6e-14 84.0 139 37.4
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.6e-14 84.0 120 36.7
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.2e-12 77.8 114 38.6
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 8.4e-11 71.6 76 44.7
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 1.1e-10 71.2 107 41.1
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 1.4e-10 70.9 141 36.9
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 6.6e-08 62.0 56 48.2
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 7.3e-07 58.5 122 32.8
MCO05G554 Micromonas commoda HOM05D007263 ORTHO05D268563 6.2e-06 55.5 72 43.1
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 6.2e-06 55.5 122 32.0


User provided reference genes

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