Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 0.0e+00 1850.9 942 100.0
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 4.6e-74 283.9 172 82.6
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.4e-17 96.3 83 50.6
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.3e-17 95.5 79 54.4
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 3.9e-17 94.7 83 49.4
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 5.1e-17 94.4 83 51.8
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.5e-16 92.8 83 48.2
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 2.0e-16 92.4 83 47.0
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 2.0e-16 92.4 100 44.0
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.5e-16 92.0 206 31.6
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.5e-16 92.0 83 47.0
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 2.5e-16 92.0 85 47.1
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 5.7e-16 90.9 83 45.8
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 5.7e-16 90.9 94 44.7
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 5.7e-16 90.9 94 44.7
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 7.4e-16 90.5 83 49.4
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 7.4e-16 90.5 94 44.7
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 7.4e-16 90.5 83 49.4
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 9.7e-16 90.1 83 47.0
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 9.7e-16 90.1 117 40.2
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.3e-15 89.7 189 32.8
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.2e-15 89.0 84 44.0
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.8e-15 88.6 90 42.2
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 4.8e-15 87.8 91 42.9
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.8e-15 87.8 81 46.9
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 4.8e-15 87.8 149 32.2
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 6.3e-15 87.4 91 42.9
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 8.2e-15 87.0 77 49.4
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 8.2e-15 87.0 82 45.1
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.1e-14 86.7 83 44.6
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 1.4e-14 86.3 83 44.6
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.4e-14 86.3 79 46.8
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.8e-14 85.9 79 45.6
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 1.8e-14 85.9 87 39.1
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 1.8e-14 85.9 85 45.9
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 3.1e-14 85.1 84 45.2
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 3.1e-14 85.1 83 45.8
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 3.1e-14 85.1 135 36.3
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 4.1e-14 84.7 244 27.0
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 4.1e-14 84.7 80 46.2
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 4.1e-14 84.7 94 39.4
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 4.1e-14 84.7 250 29.6
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.1e-14 84.7 123 38.2
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 5.3e-14 84.3 174 35.6
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 5.3e-14 84.3 79 45.6
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 5.3e-14 84.3 88 45.5
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 6.9e-14 84.0 85 45.9
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 9.1e-14 83.6 84 45.2
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 9.1e-14 83.6 167 32.3
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 9.1e-14 83.6 149 31.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.2e-13 83.2 83 45.8
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.0e-13 82.4 85 41.2
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 2.0e-13 82.4 77 46.8
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 2.0e-13 82.4 117 36.8
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.6e-13 82.0 79 48.1
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 2.6e-13 82.0 94 42.6
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.6e-13 82.0 85 43.5
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.6e-13 82.0 80 47.5
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 2.6e-13 82.0 93 40.9
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 3.4e-13 81.6 154 33.8
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 3.4e-13 81.6 83 44.6
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 3.4e-13 81.6 83 44.6
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 3.4e-13 81.6 83 42.2
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.4e-13 81.6 193 32.1
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 4.5e-13 81.3 83 42.2
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 4.5e-13 81.3 86 41.9
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 7.7e-13 80.5 211 29.4
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.0e-12 80.1 85 41.2
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.0e-12 80.1 198 28.8
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.7e-12 79.3 159 32.1
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.7e-12 79.3 82 45.1
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 2.2e-12 79.0 81 42.0
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.2e-12 79.0 92 41.3
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 2.2e-12 79.0 127 39.4
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 2.2e-12 79.0 84 38.1
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.2e-12 79.0 77 46.8
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 2.9e-12 78.6 80 45.0
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.8e-12 78.2 79 45.6
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 3.8e-12 78.2 79 45.6
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 3.8e-12 78.2 81 44.4
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 5.0e-12 77.8 83 37.3
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 5.0e-12 77.8 83 37.3
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 5.0e-12 77.8 78 48.7
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 6.5e-12 77.4 79 45.6
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 8.5e-12 77.0 81 40.7
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 8.5e-12 77.0 84 40.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.1e-11 76.6 91 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1791 Anthoceros agrestis HOM05D006067 ORTHO05D007327 1.4e-11 76.3 150 32.7
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.4e-11 76.3 83 38.6
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.9e-11 75.9 81 38.3
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.5e-11 75.5 83 44.6
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 3.2e-11 75.1 243 25.1
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.2e-11 75.1 83 36.1
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 3.2e-11 75.1 78 43.6
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 4.2e-11 74.7 269 25.3
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 4.2e-11 74.7 79 45.6
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 7.2e-11 73.9 103 34.0
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 9.4e-11 73.6 82 42.7
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.2e-10 73.2 82 41.5
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.2e-10 73.2 82 41.5
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.6e-10 72.8 82 41.5
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.6e-10 72.8 107 40.2
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 2.1e-10 72.4 274 25.2
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 3.6e-10 71.6 93 37.6
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 4.7e-10 71.2 65 52.3
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 6.1e-10 70.9 81 38.3
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 7.9e-10 70.5 82 41.5
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 7.9e-10 70.5 130 33.1
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.4e-09 69.7 79 40.5
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.4e-09 69.7 79 40.5
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.8e-09 69.3 82 40.2
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.3e-07 60.8 134 30.6


User provided reference genes

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