Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0061s0023 Marchantia polymorpha HOM05D003123 ORTHO05D003492 3.1e-194 681.8 384 100.0
SEGI_28277 Sequoiadendron giganteum HOM05D003123 ORTHO05D003492 1.1e-45 188.3 285 49.8
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 2.6e-44 183.7 331 31.7
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 1.3e-43 181.4 299 40.5
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 4.9e-43 179.5 309 39.8
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 4.2e-42 176.4 301 36.2
PSO339G1610 Papaver somniferum HOM05D003123 ORTHO05D003492 9.3e-42 175.3 296 40.5
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 1.2e-41 174.9 281 33.1
Pp3c11_480 Physcomitrium patens HOM05D003123 ORTHO05D003492 2.7e-41 173.7 318 45.3
CsaV3_5G036840 Cucumis sativus L. HOM05D003123 ORTHO05D003492 3.9e-40 169.9 287 33.1
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.5e-39 167.2 267 39.3
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 3.3e-39 166.8 267 39.0
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 4.3e-39 166.4 293 30.7
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 5.7e-39 166.0 319 38.2
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 9.6e-39 165.2 308 29.9
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 9.6e-39 165.2 274 31.0
ATR1136G090 Amborella trichopoda HOM05D003123 ORTHO05D003492 1.3e-38 164.9 323 44.9
C02p29330 Brassica napus HOM05D003123 ORTHO05D003492 1.6e-38 164.5 332 30.4
A02p17650 Brassica napus HOM05D003123 ORTHO05D003492 3.7e-38 163.3 336 36.9
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 8.2e-38 162.2 267 38.6
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 8.2e-38 162.2 255 39.6
VMungo0647G0944 Vigna mungo HOM05D003123 ORTHO05D003492 1.8e-37 161.0 311 30.5
FAN07G0209 Fragaria x ananassa HOM05D003123 ORTHO05D003492 3.1e-37 160.2 260 38.8
Actinidia17974 Actinidia chinensis HOM05D003123 ORTHO05D003492 6.9e-37 159.1 311 30.2
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 9.0e-37 158.7 289 38.1
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 2.0e-36 157.5 275 37.5
Actinidia37868 Actinidia chinensis HOM05D003123 ORTHO05D003492 2.6e-36 157.1 303 36.3
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 4.5e-36 156.4 289 34.6
BcaB05g24702 Brassica carinata HOM05D003123 ORTHO05D003492 5.9e-36 156.0 336 29.2
Aqoxy3G03721 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 7.6e-36 155.6 314 35.4
RcHm_v2.0_Chr2g0090581 Rosa chinensis HOM05D003123 ORTHO05D003492 1.7e-35 154.5 246 39.0
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 2.2e-35 154.1 308 36.7
Thhalv10018661m.g Eutrema salsugineum HOM05D003123 ORTHO05D003492 2.2e-35 154.1 354 28.0
Eucgr.C02983 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.9e-35 153.7 296 33.4
Nitab4.5_0006880g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 5.0e-35 152.9 301 43.2
FvH4_4g26190 Fragaria vesca HOM05D003123 ORTHO05D003492 8.5e-35 152.1 260 37.7
ClCG10G021960 Citrullus lanatus HOM05D003123 ORTHO05D003492 1.1e-34 151.8 300 30.3
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 1.1e-34 151.8 277 29.2
SMO203G0254 Selaginella moellendorffii HOM05D003123 ORTHO05D003492 1.1e-34 151.8 253 40.3
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 1.4e-34 151.4 289 36.0
BraA02t06811Z Brassica rapa HOM05D003123 ORTHO05D003492 1.9e-34 151.0 321 36.1
Sp5g27120 Schrenkiella parvula HOM05D003123 ORTHO05D003492 1.9e-34 151.0 376 33.2
EL10Ac3g07342 Beta vulgaris HOM05D003123 ORTHO05D003492 5.5e-34 149.4 293 43.3
CAN.G959.24 Capsicum annuum HOM05D003123 ORTHO05D003492 5.5e-34 149.4 331 33.8
CDE02G4023 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 5.5e-34 149.4 278 41.0
Sed0001197 Sechium edule HOM05D003123 ORTHO05D003492 7.2e-34 149.1 257 32.3
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 2.1e-33 147.5 279 29.7
HanXRQChr17g0548851 Helianthus annuus HOM05D003123 ORTHO05D003492 2.1e-33 147.5 360 36.7
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 2.1e-33 147.5 297 28.6
SGA_v2.0_scaffold106G30554 Striga asiatica HOM05D003123 ORTHO05D003492 2.1e-33 147.5 329 36.2
DCAR_007178 Daucus carota HOM05D003123 ORTHO05D003492 3.6e-33 146.7 266 45.1
Gohir.A05G273300 Gossypium hirsutum HOM05D003123 ORTHO05D003492 3.6e-33 146.7 257 37.4
Sed0001108 Sechium edule HOM05D003123 ORTHO05D003492 4.6e-33 146.4 325 32.9
BolC2t08984H Brassica oleracea HOM05D003123 ORTHO05D003492 6.1e-33 146.0 346 28.0
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 6.1e-33 146.0 278 31.3
Cfa020349 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.0e-32 145.2 273 37.4
Haze_13900 Corylus avellana HOM05D003123 ORTHO05D003492 1.0e-32 145.2 288 36.1
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.0e-32 145.2 300 28.7
Oeu023005.1 Olea europaea HOM05D003123 ORTHO05D003492 1.0e-32 145.2 246 39.4
ECA240G3446 Erigeron canadensis HOM05D003123 ORTHO05D003492 1.8e-32 144.4 337 28.5
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 1.8e-32 144.4 318 37.4
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 2.3e-32 144.1 282 28.7
Gohir.D05G124000 Gossypium hirsutum HOM05D003123 ORTHO05D003492 2.3e-32 144.1 311 28.6
Sc25g0005590 Simmondsia chinensis HOM05D003123 ORTHO05D003492 3.9e-32 143.3 306 29.4
GSVIVG01025855001 Vitis vinifera HOM05D003123 ORTHO05D003492 5.1e-32 142.9 245 38.4
RcHm_v2.0_Chr7g0228771 Rosa chinensis HOM05D003123 ORTHO05D003492 6.7e-32 142.5 265 31.7
PGSC0003DMG400007202 Solanum tuberosum HOM05D003123 ORTHO05D003492 6.7e-32 142.5 328 28.7
AUR62018436 Chenopodium quinoa HOM05D003123 ORTHO05D003492 8.7e-32 142.1 315 35.2
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 1.1e-31 141.7 311 27.7
Cpa.g.sc66.19 Carica papaya HOM05D003123 ORTHO05D003492 1.5e-31 141.4 248 30.2
MBI01_g42407_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 1.5e-31 141.4 274 41.2
Nitab4.5_0000123g0230 Nicotiana tabacum HOM05D003123 ORTHO05D003492 1.9e-31 141.0 293 35.5
Zm00001eb353990 Zea mays HOM05D003123 ORTHO05D003492 2.5e-31 140.6 242 46.7
Solyc10g077110.1 Solanum lycopersicum HOM05D003123 ORTHO05D003492 4.3e-31 139.8 331 31.7
BcaB03g15643 Brassica carinata HOM05D003123 ORTHO05D003492 7.4e-31 139.0 347 27.4
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.3e-30 138.3 289 35.6
TAR636G3586 Trochodendron aralioides HOM05D003123 ORTHO05D003492 1.3e-30 138.3 321 31.5
Lj1C1079T5 Lonicera japonica HOM05D003123 ORTHO05D003492 1.6e-30 137.9 282 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4391 Anthoceros agrestis HOM05D003123 ORTHO05D003492 2.2e-30 137.5 311 34.7
BcaC08g45739 Brassica carinata HOM05D003123 ORTHO05D003492 2.8e-30 137.1 346 29.8
BolC6t38625H Brassica oleracea HOM05D003123 ORTHO05D003492 2.8e-30 137.1 346 29.8
ClCG05G026900 Citrullus lanatus HOM05D003123 ORTHO05D003492 2.8e-30 137.1 299 29.1
MD15G1186600 Malus domestica HOM05D003123 ORTHO05D003492 2.8e-30 137.1 262 33.6
Sopen10g028790 Solanum pennellii HOM05D003123 ORTHO05D003492 2.8e-30 137.1 249 40.2
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 3.7e-30 136.7 306 32.0
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 3.7e-30 136.7 307 26.7
BcaC03g15328 Brassica carinata HOM05D003123 ORTHO05D003492 4.8e-30 136.3 323 27.9
C06p35180 Brassica napus HOM05D003123 ORTHO05D003492 6.3e-30 136.0 346 26.6
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 6.3e-30 136.0 299 35.1
Peaxi162Scf00991g00337 Petunia axillaris HOM05D003123 ORTHO05D003492 6.3e-30 136.0 352 32.1
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 1.1e-29 135.2 270 31.9
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.1e-29 135.2 260 36.9
Gohir.D05G275700 Gossypium hirsutum HOM05D003123 ORTHO05D003492 1.4e-29 134.8 257 35.8
Aa31LG4G8580 Aethionema arabicum HOM05D003123 ORTHO05D003492 3.1e-29 133.7 332 31.0
Cfa020344 Carpinus fangiana HOM05D003123 ORTHO05D003492 3.1e-29 133.7 244 36.9
Haze_09675 Corylus avellana HOM05D003123 ORTHO05D003492 4.1e-29 133.3 272 34.9
A07p30420 Brassica napus HOM05D003123 ORTHO05D003492 5.3e-29 132.9 346 28.3
BraA07t30679Z Brassica rapa HOM05D003123 ORTHO05D003492 5.3e-29 132.9 346 28.3
CiPaw.03G019700 Carya illinoinensis HOM05D003123 ORTHO05D003492 5.3e-29 132.9 232 38.8
HanXRQChr10g0308101 Helianthus annuus HOM05D003123 ORTHO05D003492 5.3e-29 132.9 292 39.4
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 5.3e-29 132.9 311 35.4
Eucgr.A00588 Eucalyptus grandis HOM05D003123 ORTHO05D003492 6.9e-29 132.5 299 34.1
ClCG01G026000 Citrullus lanatus HOM05D003123 ORTHO05D003492 9.1e-29 132.1 322 27.3
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 9.1e-29 132.1 299 28.8
PSO339G0960 Papaver somniferum HOM05D003123 ORTHO05D003492 1.2e-28 131.7 308 34.4
HPP92_013255 Vanilla planifolia HOM05D003123 ORTHO05D003492 1.2e-28 131.7 305 38.7
DCAR_030989 Daucus carota HOM05D003123 ORTHO05D003492 1.5e-28 131.3 308 30.8
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 1.5e-28 131.3 370 33.8
Migut.K00168 Erythranthe guttata HOM05D003123 ORTHO05D003492 2.6e-28 130.6 287 34.1
LjContig00238g0006541 Lotus japonicus HOM05D003123 ORTHO05D003492 2.6e-28 130.6 308 40.3
Ah.15g091760 Amaranthus hybridus HOM05D003123 ORTHO05D003492 3.4e-28 130.2 329 28.0
CiPaw.04G106900 Carya illinoinensis HOM05D003123 ORTHO05D003492 3.4e-28 130.2 200 34.0
Ca_12615_v3 Cicer arietinum L. HOM05D003123 ORTHO05D003492 3.4e-28 130.2 252 35.7
MBI03_g18675_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 3.4e-28 130.2 296 37.2
AL2G31680 Arabidopsis lyrata HOM05D003123 ORTHO05D003492 5.9e-28 129.4 316 26.6
Peaxi162Scf00324g00531 Petunia axillaris HOM05D003123 ORTHO05D003492 5.9e-28 129.4 322 33.5
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 7.7e-28 129.0 293 32.8
Cc11_g07170 Coffea canephora HOM05D003123 ORTHO05D003492 7.7e-28 129.0 247 29.1
Peaxi162Scf00538g00224 Petunia axillaris HOM05D003123 ORTHO05D003492 7.7e-28 129.0 333 32.7
Dinv22133 Davidia involucrata HOM05D003123 ORTHO05D003492 1.3e-27 128.3 247 36.0
HPP92_013244 Vanilla planifolia HOM05D003123 ORTHO05D003492 2.9e-27 127.1 311 37.6
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 5.0e-27 126.3 339 28.3
Phvul.005G025300 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 2.5e-26 124.0 247 27.9
Nitab4.5_0001270g0190 Nicotiana tabacum HOM05D003123 ORTHO05D003492 3.2e-26 123.6 307 32.6
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 4.2e-26 123.2 274 33.6
MELO3C012480.2 Cucumis melo HOM05D003123 ORTHO05D003492 5.5e-26 122.9 183 35.0
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 7.2e-26 122.5 324 29.9
Prupe.7G229900 Prunus persica HOM05D003123 ORTHO05D003492 9.4e-26 122.1 224 28.6
Nitab4.5_0012379g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.1e-25 120.9 297 34.7
Glyma.02G292900 Glycine max HOM05D003123 ORTHO05D003492 6.1e-25 119.4 254 26.0
Hund19062 Selenicereus undatus HOM05D003123 ORTHO05D003492 6.1e-25 119.4 269 34.6
Rhsim06G0030700 Rhododendron simsii HOM05D003123 ORTHO05D003492 7.9e-25 119.0 336 31.2
HPP92_013254 Vanilla planifolia HOM05D003123 ORTHO05D003492 1.0e-24 118.6 292 38.7
AT1G72050 Arabidopsis thaliana HOM05D003123 ORTHO05D003492 2.3e-24 117.5 324 33.3
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 2.3e-24 117.5 310 26.1
PSO384G3002 Papaver somniferum HOM05D003123 ORTHO05D003492 2.3e-24 117.5 308 32.5
unitig_0.g2667 Utricularia gibba HOM05D003123 ORTHO05D003492 3.0e-24 117.1 324 26.9
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 5.1e-24 116.3 247 38.1
RcHm_v2.0_Chr5g0055971 Rosa chinensis HOM05D003123 ORTHO05D003492 6.7e-24 115.9 185 32.4
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 8.8e-24 115.5 309 36.9
ECA234G4206 Erigeron canadensis HOM05D001066 ORTHO05D000891 2.6e-23 114.0 306 35.6
Sp3g26870 Schrenkiella parvula HOM05D003123 ORTHO05D003492 5.7e-23 112.8 174 32.2
CARHR064870 Cardamine hirsuta HOM05D003123 ORTHO05D003492 7.4e-23 112.5 284 26.1
RcHm_v2.0_Chr2g0120581 Rosa chinensis HOM05D003123 ORTHO05D003492 2.8e-22 110.5 138 40.6
Carub.0002s1883 Capsella rubella HOM05D003123 ORTHO05D003492 1.4e-21 108.2 200 29.0
THA.LOC104818694 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 1.4e-21 108.2 338 27.8
MSTRG.26188 Avicennia marina HOM05D003123 ORTHO05D003492 1.8e-21 107.8 269 27.1
vmacro21662 Vaccinium macrocarpon HOM05D003123 ORTHO05D003492 3.1e-21 107.1 248 26.6
PGR042G0103 Punica granatum HOM05D003123 ORTHO05D003492 6.9e-21 105.9 291 31.6
Lalb_Chr04g0264151 Lupinus albus HOM05D003123 ORTHO05D003492 1.2e-20 105.1 252 39.7
ATR1136G200 Amborella trichopoda HOM05D003123 ORTHO05D003492 5.9e-20 102.8 258 40.3
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 5.9e-20 102.8 333 22.8
Zm00001eb265630 Zea mays HOM05D003123 ORTHO05D003492 1.3e-19 101.7 304 30.9
Haze_09687 Corylus avellana HOM05D003123 ORTHO05D003492 3.8e-19 100.1 115 38.3
Eucgr.A00559 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.5e-18 97.4 247 27.5
Lj3g0017551 Lotus japonicus HOM05D003123 ORTHO05D003492 2.5e-18 97.4 335 35.2
Nitab4.5_0020143g0020 Nicotiana tabacum HOM05D003123 ORTHO05D003492 4.2e-18 96.7 170 30.6
CSS0039589 Camellia sinensis var. sinensis HOM05D003123 ORTHO05D003492 5.5e-18 96.3 297 30.3
Eucgr.A00580 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.6e-17 94.7 267 24.7
RcHm_v2.0_Chr7g0228721 Rosa chinensis HOM05D003123 ORTHO05D003492 3.6e-17 93.6 100 41.0
Eucgr.A00567 Eucalyptus grandis HOM05D003123 ORTHO05D003492 4.7e-17 93.2 349 24.4
Hma1.2p1_0016F.1_g010890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 4.7e-17 93.2 303 23.4
Peaxi162Scf00538g00233 Petunia axillaris HOM05D000722 ORTHO05D003492 4.7e-17 93.2 170 30.6
THA.LOC104800122 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 7.9e-17 92.4 316 30.4
Eucgr.A00584 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.8e-16 91.3 300 24.7
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 1.1e-15 88.6 302 28.1
Aqoxy6G01455 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 4.4e-15 86.7 129 32.6
AUR62020997 Chenopodium quinoa HOM05D003123 ORTHO05D003492 1.1e-13 82.0 340 29.1
CDE04G2204 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 3.1e-13 80.5 257 32.3
Psat5g221680 Pisum sativum HOM05D003123 ORTHO05D003492 5.3e-13 79.7 197 25.9
Lsat_1_v5_gn_9_99300 Lactuca sativa HOM05D003123 ORTHO05D003492 7.0e-13 79.3 282 21.6
Duzib235G1283 Durio zibethinus HOM05D003123 ORTHO05D003492 1.6e-12 78.2 216 24.5
Cfa008143 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.0e-11 75.5 162 40.1
Phvul.008G270400 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 2.2e-11 74.3 278 21.2
CBR_g6693 Chara braunii HOM05D003123 ORTHO05D003492 5.0e-11 73.2 174 28.7
Ah.04g150240 Amaranthus hybridus HOM05D003123 ORTHO05D003492 7.2e-10 69.3 110 34.5
Cfa020612 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.6e-09 68.2 91 36.3
Sc13g0000820 Simmondsia chinensis HOM05D003123 ORTHO05D003492 2.1e-09 67.8 269 30.9
FAN26G0171 Fragaria x ananassa HOM05D003123 ORTHO05D003492 4.7e-09 66.6 266 29.3
Mapoly0061s0032 Marchantia polymorpha HOM05D002364 ORTHO05D002540 1.8e-08 64.7 58 58.6
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 2.3e-08 64.3 333 24.9
Ah.04g150340 Amaranthus hybridus HOM05D003123 ORTHO05D003492 5.2e-08 63.2 117 31.6
Hma1.2p1_0278F.1_g111890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 1.7e-06 58.2 109 27.5
SEGI_40426 Sequoiadendron giganteum HOM05D002364 ORTHO05D002540 8.2e-06 55.8 49 55.1


User provided reference genes

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